We published the genomic data of Deferribacter desulfuricans SSM1^T (= NBRC 101012) including the information of DNA clones distributed from the NBRC.

We published the genomic data of Methanocella paludicola SANAE^T (= NBRC 101707) including the information of DNA clones distributed from the NBRC.

We published the genome data of Acetobacter pasteurianus IFO 3283 including the information of DNA clones distributed from the NBRC

See "List of updated ORFs" for more information.
List of updated ORFs

We published the genome data of Desulfovibrio magneticus RS-1 (NBRC 104933) including the information of DNA clones distributed from the NBRC.

See "List of updated ORFs" for more information.
List of updated ORFs

See "List of updated ORFs" for more information.
List of updated ORFs : B. brevis NBRC 10059

We published the genomic data of Brevibacillus brevis 47 (NBRC 100599) including the information of DNA clones distributed from the NBRC.

We published the genomic data of Gemmatimonas aurantiaca T-27^T (NBRC 100505) including the information of DNA clones distributed from the NBRC.
This is the first report of genome sequence of bacteria belonging to the phylum Gemmatimonadetes.

We published the genomic data of Rhodococcus erythropolis PR4 (NBRC 100887) including the information of DNA clones distributed from the NBRC.
This work was conducted as a part of the project "Development of a Technological Infrastructure for Industrial Bioprocesses" of the New Energy and Industrial Technology Development Organization (NEDO), Japan.

We published the genomic data of Rhodococcus opacus B4 including the information of DNA clones distributed from the NBRC.
This work was conducted as a part of the project "Development of a Technological Infrastructure for Industrial Bioprocesses" of the New Energy and Industrial Technology Development Organization (NEDO), Japan.

We re-annotated Kocuria rhizophila DC2201 and updated the features of K. rhizophila genome in DOGAN database.
See List of updated ORFs for more information.

We published the genomic data of Kocuria rhizophila DC2201 (NBRC 103217) including the information of DNA clones distributed from the NBRC.
This work was conducted as a part of the project "Development of a Technological Infrastructure for Industrial Bioprocesses" of the New Energy and Industrial Technology Development Organization (NEDO), Japan.

We analyzed the relationships among all genes/ORFs between Pyrococcus horikoshii OT3 and the following organisms and the results were incorporated into the DOGAN.

Pyrococcus abyssi GE5

Pyrococcus furiosus DSM 3638

Thermococcus kodakarensis KOD1

We re-annotated Pyrococcus horikoshii OT3 and updated the features of P. horikoshii genome in DOGAN database.

See 'List of updated genes' for more information.

See 'List of updated ORFs' for more information.
List of updated ORFs : S. aureus N315
List of updated ORFs : S. aureus MW2

We added a new function to the DOGAN for displaying the information of the microbial genomic DNA clones distributed from the NBRC. You can search for the clone covering your target gene(s) of Aspergillus oryzae RIB40 at the DOGAN.

Hundreds of microbial genomes have already been completely sequenced including those analyzed at NITE. To further enhance the usefulness of the results of genome analysis, we added a new feature to the DOGAN to present comparative genomics data. We analyzed the relationships among all genes/ORFs in the five staphylococcal genomes and the results were incorporated into the DOGAN. You can compare genes/ORFs in the genomes and get the syntenic regions or points of possible genomic rearrangements displayed in the dotplot viewer.

We re-annotated Aeropyrum pernix genome and published the new set of genes. Some of them were modified by the proteome result.

We have analyzed the proteome of Aeropyrum pernix K1 by using the following methods; two-dimensional PAGE followed by MALDI-TOFMS, one-dimesional SDS-PAGE in combination with two-dimensional LC-MS/MS, multi-dimensional LC-MS/MS and 2D-PAGE followed by N-terminal amino acid sequencing.

Genome analysis of Aspergillus oryzae RIB40 has been carried out in collaboration with the National Institute of Advanced Industrial Science and Technology (AIST) and other members of the A. oryzae Genome Analysis Consortium and the resultant genomic sequence data are now released. At the same time, cross-reference information concerning the eight archaeal and bacterial genomes published in DOGAN has newly been included by linking them with the data contained in DDBJ, EMBL, GenBank and UniProt.

A serious error in a sequence file was discovered that has been left unnoticed for nine months. Those who downloaded regional nucleotide sequences of Staphylococcus aureus MW2 during the period starting October 2004 till June 2005 were found to have mistakenly acquired unrelated sequences. We deeply apologize to all DOGAN users for the inconvenience.

NITE has completely sequenced and analyzed the genome of the Staphylococcus haemolyticus JCSC1435 in collaboration with Prof. K. Hiramatsu and his colleagues at the Juntendo University.