DOGAN > References
A. oryzae A. pernix M. paludicola P. horikoshii S. tokodaii A. pasteurianus B. brevis C. efficiens D. desulfuricans D. magneticus G. aurantiaca K. rhizophila R. erythropolis R. opacus S. aureus N315 S. aureus MW2 S. haemolyticus S. avermitilis
References : Aspergillus oryzae RIB40 (= NBRC 100959)
<About this genome>
Genome sequencing and analysis of Aspergillus oryzae.
Machida M.,Asai K.,Sano M.,Tanaka T.,Kumagai T.,Terai G.,Kusumoto K.,Arima T.,Akita O.,Kashiwagi Y.,Abe K.,Gomi K.,Horiuchi H.,Kitamoto K.,Kobayashi T.,Takeuchi M.,Denning DW.,Galagan JE.,Nierman WC.,Yu J.,Archer DB.,Bennett JW.,Bhatnagar D.,Cleveland TE.,Fedorova ND.,Gotoh O.,Horikawa H.,Hosoyama A.,Ichinomiya M.,Igarashi R.,Iwashita K.,Juvvadi PR.,Kato M.,Kato Y.,Kin T.,Kokubun A.,Maeda H.,Maeyama N.,Maruyama J.,Nagasaki H.,Nakajima T.,Oda K.,Okada K.,Paulsen I.,Sakamoto K.,Sawano T.,Takahashi M.,Takase K.,Terabayashi Y.,Wortman JR.,Yamada O.,Yamagata Y.,Anazawa H.,Hata Y.,Koide Y.,Komori T.,Koyama Y.,Minetoki T.,Suharnan S.,Tanaka A.,Isono K.,Kuhara S.,Ogasawara N.,Kikuchi H. 
Nature 438 (2005) 1157-61 [PMID: 16372010]
<Journal>
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.
Galagan JE.,Calvo SE.,Cuomo C.,Ma LJ.,Wortman JR.,Batzoglou S.,Lee SI.,Basturkmen M.,Spevak CC.,Clutterbuck J.,Kapitonov V.,Jurka J.,Scazzocchio C.,Farman M.,Butler J.,Purcell S.,Harris S.,Braus GH.,Draht O.,Busch S.,D'Enfert C.,Bouchier C.,Goldman GH.,Bell-Pedersen D.,Griffiths-Jones S.,Doonan JH.,Yu J.,Vienken K.,Pain A.,Freitag M.,Selker EU.,Archer DB.,Penalva MA.,Oakley BR.,Momany M.,Tanaka T.,Kumagai T.,Asai K.,Machida M.,Nierman WC.,Denning DW.,Caddick M.,Hynes M.,Paoletti M.,Fischer R.,Miller B.,Dyer P.,Sachs MS.,Osmani SA.,Birren BW. 
Nature 438 (2005) 1105-15 [PMID: 16372000]
References : Aeropyrum pernix K1T (= NBRC 100138T)
<About this genome>
Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.
Kawarabayasi Y.,Hino Y.,Horikawa H.,Yamazaki S.,Haikawa Y.,Jin-no K.,Takahashi M.,Sekine M.,Baba S.,Ankai A.,Kosugi H.,Hosoyama A.,Fukui S.,Nagai Y.,Nishijima K.,Nakazawa H.,Takamiya M.,Masuda S.,Funahashi T.,Tanaka T.,Kudoh Y.,Yamazaki J.,Kushida N.,Oguchi A.,Kikuchi H. 
DNA Res. 6 (1999) 83-101, 145-52 [PMID: 10382966]
<Journal>
Proteome Analysis of an Aerobic Hyperthermophilic Crenarchaeon, Aeropyrum pernix K1.
Yamazaki S.,Yamazaki J.,Nishijima K.,Otsuka R.,Mise M.,Ishikawa H.,Sasaki K.,Tago S.,Isono K. a
Mol. Cell Proteomics 5 (2006) 811-23 [PMID: 16455681]
Overexpression of the genes from thermophiles in Escherichia coli by high-temperature cultivation.
Koma D.,Sawai T.,Harayama S.,Kino K. 
[PMID: 16652221]
Identification of the first archaeal oligopeptide-binding protein from the hyperthermophile Aeropyrum pernix.
Palmieri G.,Casbarra A.,Fiume I.,Catara G.,Capasso A.,Marino G.,Onesti S.,Rossi M. 
[PMID: 16636888]
Crystal structures of tyrosyl-tRNA synthetases from Archaea.
Kuratani M.,Sakai H.,Takahashi M.,Yanagisawa T.,Kobayashi T.,Murayama K.,Chen L.,Liu ZJ.,Wang BC.,Kuroishi C.,Kuramitsu S.,Terada T.,Bessho Y.,Shirouzu M.,Sekine S.,Yokoyama S. 
J. Mol. Biol. 355 (2006) 395-408 [PMID: 16325203]
Characterization of a Whole Set of tRNA Molecules in an Aerobic Hyper-thermophilic Crenarchaeon, Aeropyrum pernix K1
Yamazaki S, Kikuchi H, Kawarabayasi Y. b
DNA res. 12 (2005) 403-416 [PMID: 16769697]
Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1.
Kato-Murayama M.,Bessho Y.,Shirouzu M.,Yokoyama S. 
J. Mol. Biol. 348 (2005) 295-305 [PMID: 15811369]
Gene expression and characterization of two 2-oxoacid:ferredoxin oxidoreductases from Aeropyrum pernix K1.
Nishizawa Y.,Yabuki T.,Fukuda E.,Wakagi T. 
FEBS Lett. 579 (2005) 2319-22 [PMID: 15848165]
Crystallization and preliminary X-ray diffraction studies of a protein disulfide oxidoreductase from Aeropyrum pernix K1.
D'Ambrosio K.,De Simone G.,Pedone E.,Rossi M.,Bartolucci S.,Pedone C. 
Acta Crystallograph. Sect. F Struct. Biol. Cryst. Commun. 61 (2005) 335-6 [PMID: 16511034]
Structure of a putative trans-editing enzyme for prolyl-tRNA synthetase from Aeropyrum pernix K1 at 1.7 A resolution.
Murayama K.,Kato-Murayama M.,Katsura K.,Uchikubo-Kamo T.,Yamaguchi-Hirafuji M.,Kawazoe M.,Akasaka R.,Hanawa-Suetsugu K.,Hori-Takemoto C.,Terada T.,Shirouzu M.,Yokoyama S. 
Acta Crystallograph. Sect. F Struct. Biol. Cryst. Commun. 61 (2005) 26-9 [PMID: 16508081]
Conformational changes induced by nucleotide binding in Cdc6/ORC from Aeropyrum pernix.
Singleton MR.,Morales R.,Grainge I.,Cook N.,Isupov MN.,Wigley DB. 
J. Mol. Biol. 343 (2004) 547-57 [PMID: 15465044]
Crystallization of the xeroderma pigmentosum group F endonuclease from Aeropyrum pernix.
Lally J.,Newman M.,Murray-Rust J.,Fadden A.,Kawarabayasi Y.,McDonald N. 
Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 1658-61 [PMID: 15333947]
A preliminary solubility screen used to improve crystallization trials: crystallization and preliminary X-ray structure determination of Aeropyrum pernix flap endonuclease-1.
Collins BK.,Tomanicek SJ.,Lyamicheva N.,Kaiser MW.,Mueser TC. 
Acta Crystallogr. D Biol. Crystallogr. 60 (2004) 1674-8 [PMID: 15333952]
A novel phospholipase A2/esterase from hyperthermophilic archaeon Aeropyrum pernix K1.
Wang B.,Lu D.,Gao R.,Yang Z.,Cao S.,Feng Y. 
Protein Expr. Purif. 35 (2004) 199-205 [PMID: 15135393]
Ancestral hemoglobins in Archaea.
Freitas TA.,Hou S.,Dioum EM.,Saito JA.,Newhouse J.,Gonzalez G.,Gilles-Gonzalez MA.,Alam M. 
Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 6675-80 [PMID: 15096613]
Bifunctional phosphoglucose/phosphomannose isomerases from the Archaea Aeropyrum pernix and Thermoplasma acidophilum constitute a novel enzyme family within the phosphoglucose isomerase superfamily.
Hansen T.,Wendorff D.,Schonheit P. 
J. Biol. Chem. 279 (2004) 2262-72 [PMID: 14551194]
X-ray structure of a protein-conducting channel.
Van den Berg B.,Clemons WM.,Collinson I.,Modis Y.,Hartmann E.,Harrison SC.,Rapoport TA. 
Nature 427 (2004) 36-44 [PMID: 14661030]
A new pathway for salvaging the coenzyme B12 precursor cobinamide in archaea requires cobinamide-phosphate synthase (CbiB) enzyme activity.
Woodson JD.,Zayas CL.,Escalante-Semerena JC. 
J. Bacteriol. 185 (2003) 7193-201 [PMID: 14645280]
Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii.
Aramini JM.,Huang YJ.,Cort JR.,Goldsmith-Fischman S.,Xiao R.,Shih LY.,Ho CK.,Liu J.,Rost B.,Honig B.,Kennedy MA.,Acton TB.,Montelione GT. 
Protein Sci. 12 (2003) 2823-30 [PMID: 14627742]
Filling a gap in the central metabolism of archaea: prediction of a novel aconitase by comparative-genomic analysis.
Makarova KS.,Koonin EV. 
FEMS Microbiol. Lett. 227 (2003) 17-23 [PMID: 14568143]
A novel extracellular subtilisin-like protease from the hyperthermophile Aeropyrum pernix K1: biochemical properties, cloning, and expression.
Catara G.,Ruggiero G.,La Cara F.,Digilio FA.,Capasso A.,Rossi M. 
Extremophiles 7 (2003) 391-9 [PMID: 12908102]
Molecular recognition of proline tRNA by prolyl-tRNA synthetase from hyperthermophilic archaeon, Aeropyrum pernix K1.
Yokozawa J.,Okamoto K.,Kawarabayasi Y.,Kuno A.,Hasegawa T. 
Nucleic Acids Res. Suppl. [PMID: 14510473]
The structure of an alcohol dehydrogenase from the hyperthermophilic archaeon Aeropyrum pernix.
Guy JE.,Isupov MN.,Littlechild JA. 
J. Mol. Biol. 331 (2003) 1041-51 [PMID: 12927540]
A novel ADP-dependent DNA ligase from Aeropyrum pernix K1.
Jeon SJ.,Ishikawa K. 
FEBS Lett. 550 (2003) 69-73 [PMID: 12935888]
Comparative analysis of pyruvate kinases from the hyperthermophilic archaea Archaeoglobus fulgidus, Aeropyrum pernix, and Pyrobaculum aerophilum and the hyperthermophilic bacterium Thermotoga maritima: unusual regulatory properties in hyperthermophilic archaea.
Johnsen U.,Hansen T.,Schonheit P. 
J. Biol. Chem. 278 (2003) 25417-27 [PMID: 12654928]
Characterization of novel hexadecameric thioredoxin peroxidase from Aeropyrum pernix K1.
Jeon SJ.,Ishikawa K. 
J. Biol. Chem. 278 (2003) 24174-80 [PMID: 12707274]
Cloning, expression, and characterization of the first archaeal ATP-dependent glucokinase from aerobic hyperthermophilic archaeon Aeropyrum pernix.
Sakuraba H.,Mitani Y.,Goda S.,Kawarabayasi Y.,Ohshima T. 
J. Biochem. 133 (2003) 219-24 [PMID: 12761185]
Open reading frame sso2387 from the archaeon Sulfolobus solfataricus encodes a polypeptide with protein-serine kinase activity.
Lower BH.,Kennelly PJ. 
J. Bacteriol. 185 (2003) 3436-45 [PMID: 12754243]
Expression cloning and characterization of a novel gene that encodes the RNA-binding protein FAU-1 from Pyrococcus furiosus.
Kanai A.,Oida H.,Matsuura N.,Doi H. 
Biochem. J. 372 (2003) 253-61 [PMID: 12614195]
The first crystal structure of archaeal aldolase. Unique tetrameric structure of 2-deoxy-d-ribose-5-phosphate aldolase from the hyperthermophilic archaea Aeropyrum pernix.
Sakuraba H.,Tsuge H.,Shimoya I.,Kawakami R.,Goda S.,Kawarabayasi Y.,Katunuma N.,Ago H.,Miyano M.,Ohshima T. 
J. Biol. Chem. 278 (2003) 10799-806 [PMID: 12529358]
Characterization of a novel thermostable O-acetylserine sulfhydrylase from Aeropyrum pernix K1.
Mino K.,Ishikawa K. 
J. Bacteriol. 185 (2003) 2277-84 [PMID: 12644499]
Functional analysis of an archaebacterial voltage-dependent K+ channel.
Ruta V.,Jiang Y.,Lee A.,Chen J.,MacKinnon R. 
Nature 422 (2003) 180-5 [PMID: 12629550]
The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.
Woodson JD.,Peck RF.,Krebs MP.,Escalante-Semerena JC. 
J. Bacteriol. 185 (2003) 311-6 [PMID: 12486068]
Molecular recognition of threonine tRNA by threonyl-tRNA synthetase from an extreme thermophilic archaeon, Aeropyrum pernix K1.
Nagaoka Y.,Yokozawa J.,Umehara T.,Iwaki J.,Okamoto K.,Kawarabayasi Y.,Koyama Y.,Sako Y.,Wakagi T.,Kuno A.,Hasegawa T. 
Nucleic Acids Res. Suppl. [PMID: 12903115]
Aeropyrum pernix K1, a strictly aerobic and hyperthermophilic archaeon, has two terminal oxidases, cytochrome ba3 and cytochrome aa3.
Ishikawa R.,Ishido Y.,Tachikawa A.,Kawasaki H.,Matsuzawa H.,Wakagi T. 
Arch. Microbiol. 179 (2002) 42-9 [PMID: 12471503]
Identification and characterization of thioredoxin and thioredoxin reductase from Aeropyrum pernix K1.
Jeon SJ.,Ishikawa K. 
Eur. J. Biochem. 269 (2002) 5423-30 [PMID: 12423340]
Holliday junction-resolving enzymes from eight hyperthermophilic archaea differ in reactions with cruciform DNA.
Neef K.,Birkenbihl RP.,Kemper B. 
Extremophiles 6 (2002) 359-67 [PMID: 12382111]
The first archaeal ATP-dependent glucokinase, from the hyperthermophilic crenarchaeon Aeropyrum pernix, represents a monomeric, extremely thermophilic ROK glucokinase with broad hexose specificity.
Hansen T.,Reichstein B.,Schmid R.,Schonheit P. 
J. Bacteriol. 184 (2002) 5955-65 [PMID: 12374829]
Temperature dependence of kinetic parameters for hyperthermophilic glutamate dehydrogenase from Aeropyrum pernix K1.
Bhuiya MW.,Sakuraba H.,Ohshima T. 
Biosci. Biotechnol. Biochem. 66 (2002) 873-6 [PMID: 12036066]
Crystallization and preliminary crystallographic analysis of acylamino-acid releasing enzyme from the hyperthermophilic archaeon Aeropyrum pernix.
Wang G.,Gao R.,Ding Y.,Yang H.,Cao S.,Feng Y.,Rao Z. 
Acta Crystallogr. D Biol. Crystallogr. 58 (2002) 1054-5 [PMID: 12037315]
Kinetic study of sn-glycerol-1-phosphate dehydrogenase from the aerobic hyperthermophilic archaeon, Aeropyrum pernix K1.
Han JS.,Kosugi Y.,Ishida H.,Ishikawa K. 
Eur. J. Biochem. 269 (2002) 969-76 [PMID: 11846799]
Crystal structure of a novel carboxypeptidase from the hyperthermophilic archaeon Pyrococcus furiosus.
Arndt JW.,Hao B.,Ramakrishnan V.,Cheng T.,Chan SI.,Chan MK. 
Structure (Camb.) 10 (2002) 215-24 [PMID: 11839307]
Three proliferating cell nuclear antigen-like proteins found in the hyperthermophilic archaeon Aeropyrum pernix: interactions with the two DNA polymerases.
Daimon K.,Kawarabayasi Y.,Kikuchi H.,Sako Y.,Ishino Y. 
J. Bacteriol. 184 (2002) 687-94 [PMID: 11790738]
Introns in protein-coding genes in Archaea.
Watanabe Y.,Yokobori S.,Inaba T.,Yamagishi A.,Oshima T.,Kawarabayasi Y.,Kikuchi H.,Kita K. 
FEBS Lett. 510 (2002) 27-30 [PMID: 11755525]
Sequence, expression, and characterization of the first archaeal ATP-dependent 6-phosphofructokinase, a non-allosteric enzyme related to the phosphofructokinase-B sugar kinase family, from the hyperthermophilic crenarchaeote Aeropyrum pernix.
Hansen T.,Schonheit P. 
Arch. Microbiol. 177 (2001) 62-9 [PMID: 11797046]
Comparison of isocitrate dehydrogenase from three hyperthermophiles reveals differences in thermostability, cofactor specificity, oligomeric state, and phylogenetic affiliation.
Steen IH.,Madern D.,Karlstrom M.,Lien T.,Ladenstein R.,Birkeland NK. 
J. Biol. Chem. 276 (2001) 43924-31 [PMID: 11533060]
The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA.
Hosaka H.,Yao M.,Kimura M.,Tanaka I. 
J. Biochem. 130 (2001) 695-701 [PMID: 11686933]
Characterization of native glutamate dehydrogenase from an aerobic hyperthermophilic archaeon Aeropyrum pernix K1.
Helianti I.,Morita Y.,Yamamura A.,Murakami Y.,Yokoyama K.,Tamiya E. 
Appl. Microbiol. Biotechnol. 56 (2001) 388-94 [PMID: 11549007]
Cloning, expression and characterisation of a Family B ATP-dependent phosphofructokinase activity from the hyperthermophilic crenarachaeon Aeropyrum pernix.
Ronimus RS.,Kawarabayasi Y.,Kikuchi H.,Morgan HW. 
FEMS Microbiol. Lett. 202 (2001) 85-90 [PMID: 11506912]
Purification and characterization of the first archaeal aconitase from the thermoacidophilic Sulfolobus acidocaldarius.
Uhrigshardt H.,Walden M.,John H.,Anemuller S. 
Eur. J. Biochem. 268 (2001) 1760-71 [PMID: 11248696]
Glutamate dehydrogenase from the aerobic hyperthermophilic archaeon Aeropyrum pernix K1: enzymatic characterization, identification of the encoding gene, and phylogenetic implications.
Bhuiya MW.,Sakuraba H.,Kujo C.,Nunoura-Kominato N.,Kawarabayasi Y.,Kikuchi H.,Ohshima T. 
Extremophiles 4 (2000) 333-41 [PMID: 11139075]
Genetic analysis of a gene cluster for cyclohexanol oxidation in Acinetobacter sp. Strain SE19 by in vitro transposition.
Cheng Q.,Thomas SM.,Kostichka K.,Valentine JR.,Nagarajan V. 
J. Bacteriol. 182 (2000) 4744-51 [PMID: 10940013]
Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria.
Watanabe Y.,Gray MW. 
Nucleic Acids Res. 28 (2000) 2342-52 [PMID: 10871366]
Novel prenyltransferase gene encoding farnesylgeranyl diphosphate synthase from a hyperthermophilic archaeon, Aeropyrum pernix. Molecularevolution with alteration in product specificity.
Tachibana A.,Yano Y.,Otani S.,Nomura N.,Sako Y.,Taniguchi M. 
Eur. J. Biochem. 267 (2000) 321-8 [PMID: 10632701]
Characterization of a thermostable DNA glycosylase specific for U/G and T/G mismatches from the hyperthermophilic archaeon Pyrobaculum aerophilum.
Yang H.,Fitz-Gibbon S.,Marcotte EM.,Tai JH.,Hyman EC.,Miller JH. 
J. Bacteriol. 182 (2000) 1272-9 [PMID: 10671447]
A cambialistic SOD in a strictly aerobic hyperthermophilic archaeon, Aeropyrum pernix.
Yamano S.,Sako Y.,Nomura N.,Maruyama T. 
J. Biochem. 126 (1999) 218-25 [PMID: 10393342]
Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote.
Cann IK.,Ishino S.,Nomura N.,Sako Y.,Ishino Y. 
J. Bacteriol. 181 (1999) 5984-92 [PMID: 10498710]
Sequence and transcriptional studies of five clustered flagellin genes from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1.
Nagahisa K.,Ezaki S.,Fujiwara S.,Imanaka T.,Takagi M. 
FEMS Microbiol. Lett. 178 (1999) 183-90 [PMID: 10483738]
Evidence for a copper-coordinated histidine-tyrosine cross-link in the active site of cytochrome oxidase.
Buse G.,Soulimane T.,Dewor M.,Meyer HE.,Bluggel M. 
Protein Sci. 8 (1999) 985-90 [PMID: 10338009]
The structure and evolution of the ribosomal proteins encoded in the spc operon of the archaeon (Crenarchaeota) Sulfolobus acidocaldarius.
Yang D.,Kusser I.,Kopke AK.,Koop BF.,Matheson AT. 
Mol. Phylogenet. Evol. 12 (1999) 177-85 [PMID: 10381320]
Sulfolobus acidocaldarius inorganic pyrophosphatase: structure, thermostability, and effect of metal ion in an archael pyrophosphatase.
Leppanen VM.,Nummelin H.,Hansen T.,Lahti R.,Schafer G.,Goldman A. 
Protein Sci. 8 (1999) 1218-31 [PMID: 10386872]
The strict molybdate-dependence of glucose-degradation by the thermoacidophile Sulfolobus acidocaldarius reveals the first crenarchaeotic molybdenum containing enzyme--an aldehyde oxidoreductase.
Kardinahl S.,Schmidt CL.,Hansen T.,Anemuller S.,Petersen A.,Schafer G. 
Eur. J. Biochem. 260 (1999) 540-8 [PMID: 10095793]
Molecular characterization and postsplicing fate of three introns within the single rRNA operon of the hyperthermophilic archaeon Aeropyrum pernix K1.
Nomura N.,Sako Y.,Uchida A. 
J. Bacteriol. 180 (1998) 3635-43 [PMID: 9658008]
Glutamate-1-semialdehyde aminotransferase from Sulfolobus solfataricus.
Palmieri G.,Di Palo M.,Scaloni A.,Orru S.,Marino G.,Sannia G. 
Biochem. J. 320 (1996) 541-5 [PMID: 8973563]
A putative signal recognition particle receptor alpha subunit (SR alpha) homologue is expressed in the hyperthermophilic crenarchaeon Sulfolobus acidocaldarius.
Moll R.,Schmidtke S.,Schaefer G. 
FEMS Microbiol. Lett. 137 (1996) 51-6 [PMID: 8935656]
Nucleotide sequence of the gene for a 74 kDa DNA polymerase from the archaeon Sulfolobus solfataricus.
Prangishvili D.,Klenk HP. 
Nucleic Acids Res. 21 (1993) 2768 [PMID: 8332474]
Protein topography of Sulfolobus solfataricus ribosomes by cross-linking with 2-iminothiolane. Sso L12e, Sso L10e, and Sso L11e are neighbors.
Casiano C.,Traut RR. 
J. Biol. Chem. 266 (1991) 21578-83 [PMID: 1939187]
Purification and characterisation of an archaebacterial succinate dehydrogenase complex from the plasma membrane of the thermoacidophile Sulfolobus acidocaldarius.
Moll R.,Schafer G. 
Eur. J. Biochem. 201 (1991) 593-600 [PMID: 1935955]
Purification and properties of a thermostable fumarate hydratase from the archaeobacterium Sulfolobus solfataricus.
Puchegger S.,Redl B.,Stoffler G. 
J. Gen. Microbiol. 136 (1990) 1537-41 [PMID: 2124611]
Structure and evolution of the L11, L1, L10, and L12 equivalent ribosomal proteins in eubacteria, archaebacteria, and eucaryotes.
Ramirez C.,Shimmin LC.,Newton CH.,Matheson AT.,Dennis PP. 
Can. J. Microbiol. 35 (1989) 234-44 [PMID: 2497941]
References : Methanocella paludicola  SANAET (= NBRC 101707T)
<Journal>
Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov.
Sakai S, Imachi H, Hanada S, Ohashi A, Harada H, Kamagata Y. 
Int. J. Syst. Evol. Microbiol. 58 (2008) 929-936 [PMID: 18398197]
Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I.
Sakai S, Imachi H, Sekiguchi Y, Ohashi A, Harada H, Kamagata Y. 
Appl. Environ. Microbiol. 73 (2007) 4326-4331 [PMID: 17483259]
References : Pyrococcus horikoshii OT3T (= NBRC 100139T)
<About this genome>
Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.
Kawarabayasi Y.,Sawada M.,Horikawa H.,Haikawa Y.,Hino Y.,Yamamoto S.,Sekine M.,Baba S.,Kosugi H.,Hosoyama A.,Nagai Y.,Sakai M.,Ogura K.,Otsuka R.,Nakazawa H.,Takamiya M.,Ohfuku Y.,Funahashi T.,Tanaka T.,Kudoh Y.,Yamazaki J.,Kushida N.,Oguchi A.,Aoki K.,Kikuchi H. 
DNA Res. 5 (1998) 55-76 [PMID: 9679194]
<Journal>
Structure of a glutamate transporter homologue from Pyrococcus horikoshii.
Yernool D.,Boudker O.,Jin Y.,Gouaux E. 
Nature 431 (2004) 811-8 [PMID: 15483603]
Nucleotide substitutions in Staphylococcus aureus strains, Mu50, Mu3, and N315.
Ohta T, Hirakawa H, Morikawa K, Maruyama A, Inose Y, Yamashita A, Oshima K, Kuroda M, Hattori M, Hiramatsu K, Kuhara S, Hayashi H. 
DNA Res. 11 (2004) 51-6 [PMID: 15141945]
A hyperthermostable D-ribose-5-phosphate isomerase from Pyrococcus horikoshii characterization and three-dimensional structure.
Ishikawa K.,Matsui I.,Payan F.,Cambillau C.,Ishida H.,Kawarabayasi Y.,Kikuchi H.,Roussel A. 
Structure (Camb.) 10 (2002) 877-86 [PMID: 12057201]
Crystal structure of aspartate racemase from Pyrococcus horikoshii OT3 and its implications for molecular mechanism of PLP-independent racemization.
Liu L.,Iwata K.,Kita A.,Kawarabayasi Y.,Yohda M.,Miki K. 
J. Mol. Biol. 319 (2002) 479-89 [PMID: 12051922]
Crystal structure of archaeosine tRNA-guanine transglycosylase.
Ishitani R.,Nureki O.,Fukai S.,Kijimoto T.,Nameki N.,Watanabe M.,Kondo H.,Sekine M.,Okada N.,Nishimura S.,Yokoyama S. 
J. Mol. Biol. 318 (2002) 665-77 [PMID: 12054814]
Crystallization and preliminary X-ray analysis of recombinant histone HPhA from the hyperthermophilic archaeon Pyrococcus horikoshii OT3.
Li T.,Ji X.,Sun F.,Gao R.,Cao S.,Feng Y.,Rao Z. 
Acta Crystallogr. D Biol. Crystallogr. 58 (2002) 870-1 [PMID: 11976507]
Functional convergence of two lysyl-tRNA synthetases with unrelated topologies.
Terada T.,Nureki O.,Ishitani R.,Ambrogelly A.,Ibba M.,Soll D.,Yokoyama S. 
Nat. Struct. Biol. 9 (2002) 257-62 [PMID: 11887185]
Substrate specificity engineering of beta-mannosidase and beta-glucosidase from Pyrococcus by exchange of unique active site residues.
Kaper T.,van Heusden HH.,van Loo B.,Vasella A.,van der Oost J.,de Vos WM. 
Biochemistry 41 (2002) 4147-55 [PMID: 11900558]
Pyrococcus prefoldin stabilizes protein-folding intermediates and transfers them to chaperonins for correct folding.
Okochi M.,Yoshida T.,Maruyama T.,Kawarabayasi Y.,Kikuchi H.,Yohda M. 
Biochem. Biophys. Res. Commun. 291 (2002) 769-74 [PMID: 11866431]
FK506 binding protein from the hyperthermophilic archaeon Pyrococcus horikoshii suppresses the aggregation of proteins in Escherichia coli.
Ideno A.,Furutani M.,Iba Y.,Kurosawa Y.,Maruyama T. 
Appl. Environ. Microbiol. 68 (2002) 464-9 [PMID: 11823179]
Active site of deblocking aminopeptidase from Pyrococcus horikoshii.
Onoe S.,Ando S.,Ataka M.,Ishikawa K. 
Biochem. Biophys. Res. Commun. 290 (2002) 994-7 [PMID: 11798173]
Hyperthermostable endoglucanase from Pyrococcus horikoshii.
Ando S.,Ishida H.,Kosugi Y.,Ishikawa K. 
Appl. Environ. Microbiol. 68 (2002) 430-3 [PMID: 11772658]
Crystallization and preliminary X-ray analysis of a DNA primase from hyperthermophilic archaeon Pyrococcus horikoshii.
Ito N.,Nureki O.,Shirouzu M.,Yokoyama S.,Hanaoka F. 
J. Biochem. 130 (2001) 727-30 [PMID: 11726270]
Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii.
Du X.,Wang W.,Kim R.,Yakota H.,Nguyen H.,Kim SH. 
Biochemistry 40 (2001) 14166-72 [PMID: 11714269]
Pathway for the synthesis of mannosylglycerate in the hyperthermophilic archaeon Pyrococcus horikoshii. Biochemical and genetic characterization of key enzymes.
Empadinhas N.,Marugg JD.,Borges N.,Santos H.,da Costa MS. 
J. Biol. Chem. 276 (2001) 43580-8 [PMID: 11562374]
The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA.
Hosaka H.,Yao M.,Kimura M.,Tanaka I. 
J. Biochem. 130 (2001) 695-701 [PMID: 11686933]
Crystallization and preliminary X-ray analysis of aspartate racemase from Pyrococcus horikoshii OT3.
Liu L.,Iwata K.,Kawarabayasi Y.,Kikuchi H.,Kita A.,Yohda M.,Miki K. 
Acta Crystallogr. D Biol. Crystallogr. 57 (2001) 1674-6 [PMID: 11679741]
Crystallization and preliminary X-ray analysis of the archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii.
Ishitani R.,Nureki O.,Kijimoto T.,Watanabe M.,Kondo H.,Nameki N.,Okada N.,Nishimura S.,Yokoyama S. 
Acta Crystallogr. D Biol. Crystallogr. 57 (2001) 1659-62 [PMID: 11679736]
The three-dimensional structure of septum site-determining protein MinD from Pyrococcus horikoshii OT3 in complex with Mg-ADP.
Sakai N.,Yao M.,Itou H.,Watanabe N.,Yumoto F.,Tanokura M.,Tanaka I. 
Structure (Camb.) 9 (2001) 817-26 [PMID: 11566131]
Invariant Asp-1122 and Asp-1124 are essential residues for polymerization catalysis of family D DNA polymerase from Pyrococcus horikoshii.
Shen Y.,Musti K.,Hiramoto M.,Kikuchi H.,Kawarabayashi Y.,Matsui I. 
J. Biol. Chem. 276 (2001) 27376-83 [PMID: 11319225]
The MinD protein from the hyperthermophilic archaeon Pyrococcus horikoshii: crystallization and preliminary X-ray analysis.
Sakai N.,Itou H.,Watanabe N.,Yao M.,Tanaka I. 
Acta Crystallogr. D Biol. Crystallogr. 57 (2001) 896-7 [PMID: 11375522]
The novel function of a short region K253xRxxxD259 conserved in the exonuclease domain of hyperthermostable DNA polymerase I from Pyrococcus horikoshii.
Zheng R.,Matsui E.,Shen Y.,Musti KV.,Feng Y.,Darnis S.,Kawarabayasi Y.,Kikuchi H.,Harata K.,Matsui I. 
Extremophiles 5 (2001) 111-7 [PMID: 11354454]
Novel bifunctional hyperthermostable carboxypeptidase/aminoacylase from Pyrococcus horikoshii OT3.
Ishikawa K.,Ishida H.,Matsui I.,Kawarabayasi Y.,Kikuchi H. 
Appl. Environ. Microbiol. 67 (2001) 673-9 [PMID: 11157230]
tRNA recognition of tRNA-guanine transglycosylase from a hyperthermophilic archaeon, Pyrococcus horikoshii.
Watanabe M.,Nameki N.,Matsuo-Takasaki M.,Nishimura S.,Okada N. 
J. Biol. Chem. 276 (2001) 2387-94 [PMID: 11060284]
Temperature dependence of the enzyme-substrate recognition mechanism.
Ura H.,Harata K.,Matsui I.,Kuramitsu S. 
J. Biochem. 129 (2001) 173-8 [PMID: 11134972]
Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution.
Du X.,Choi IG.,Kim R.,Wang W.,Jancarik J.,Yokota H.,Kim SH. 
Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 14079-84 [PMID: 11114201]
The molecular structure of hyperthermostable aromatic aminotransferase with novel substrate specificity from Pyrococcus horikoshii.
Matsui I.,Matsui E.,Sakai Y.,Kikuchi H.,Kawarabayasi Y.,Ura H.,Kawaguchi S.,Kuramitsu S.,Harata K. 
J. Biol. Chem. 275 (2000) 4871-9 [PMID: 10671523]
Novel substrate specificity of a membrane-bound beta-glycosidase from the hyperthermophilic archaeon Pyrococcus horikoshii.
Matsui I.,Sakai Y.,Matsui E.,Kikuchi H.,Kawarabayasi Y.,Honda K. 
FEBS Lett. 467 (2000) 195-200 [PMID: 10675537]
Thermostable flap endonuclease from the archaeon, Pyrococcus horikoshii, cleaves the replication fork-like structure endo/exonucleolytically.
Matsui E.,Kawasaki S.,Ishida H.,Ishikawa K.,Kosugi Y.,Kikuchi H.,Kawarabayashi Y.,Matsui I. 
J. Biol. Chem. 274 (1999) 18297-309 [PMID: 10373433]
Thermostable aminopeptidase from Pyrococcus horikoshii.
Ando S.,Ishikawa K.,Ishida H.,Kawarabayasi Y.,Kikuchi H.,Kosugi Y. 
FEBS Lett. 447 (1999) 25-8 [PMID: 10218575]
Acylamino acid-releasing enzyme from the thermophilic archaeon Pyrococcus horikoshii.
Ishikawa K.,Ishida H.,Koyama Y.,Kawarabayasi Y.,Kawahara J.,Matsui E.,Matsui I. 
J. Biol. Chem. 273 (1998) 17726-31 [PMID: 9651372]
References : Sulfolobus tokodaii strain7T (= NBRC 100140T)
<About this genome>
Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7.
Kawarabayasi Y.,Hino Y.,Horikawa H.,Jin-no K.,Takahashi M.,Sekine M.,Baba S.,Ankai A.,Kosugi H.,Hosoyama A.,Fukui S.,Nagai Y.,Nishijima K.,Otsuka R.,Nakazawa H.,Takamiya M.,Kato Y.,Yoshizawa T.,Tanaka T.,Kudoh Y.,Yamazaki J.,Kushida N.,Oguchi A.,Aoki K.,Masuda S.,Yanagii M.,Nishimura M.,Yamagishi A.,Oshima T.,Kikuchi H. 
DNA Res. 8 (2001) 123-40 [PMID: 11572479]
References : Acetobacter pasteurianus  IFO 3283-32 (= NBRC 105190)
<About this genome>
Whole-genome analyses reveal genetic instability of Acetobacter pasteurianus
Azuma Y, Hosoyama A, Matsutani M, Furuya N, Horikawa H, Harada T, Hirakawa H, Kuhara S, Matsushita K, Fujita N, Shirai  M.
Nucleic Acids Res. 37 (2009) 5768-5783 [PMID: 19638423]
References : Brevibacillus brevis NBRC 100599 (= 47)
<Journal>
Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov.
Shida, O., Takagi, H., Kadowaki, K. and Komagata, K. 
Int. J. Syst. Bacteriol. 46 (1997) 936-946 [PMID: 8863420]
Secretion of human interleukin-2 in biologically active form by Bacillus brevis directly into culture medium.
Takimura, Y., Kato, M., Ohta, T., Yamagata, H. and Udaka, S. 
Biosci. Biotechnol. Biochem. 61 (1997) 1858-1861 [PMID: 9404065]
High-level expression of Bacillus thuringiensis phosphatidylinositol-specific phospholipase C by the Bacillus brevis host-vector system.
Kobayashi, T., Tamura, H., Taguchi, R., Udaka, S. and Ikezawa, H. 
Jpn. J. Med. Sci. Biol. 49 (1996) 103-112 [PMID: 8950642]
Use of Bacillus brevis for efficient synthesis and secretion of human epidermal growth factor.
Yamagata, H., Nakahama, K., Suzuki, Y., Kakinuma, A., Tsukagoshi, N. and Udaka, S. 
Proc. Natl. Acad. Sci. U S A. 86 (1988) 3589-3593 [PMID: 2786200]
Morphological alterations of cell wall concomitant with protein release in a protein-producing bacterium, Bacillus brevis 47.
Yamada H, Tsukagoshi N, Udaka S. 
J. Bacteriol. 148 (1981) 322-332 [PMID: 7287624]
Screening for Protein-producing Bacteria.
Udaka, S. 
Agric. Biol. Chem. 40 (1976) 523-528
References : Corynebacterium efficiens YS-314T (= NBRC 100395T)
<About this genome>
Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.
Nishio Y.,Nakamura Y.,Kawarabayasi Y.,Usuda Y.,Kimura E.,Sugimoto S.,Matsui K.,Yamagishi A.,Kikuchi H.,Ikeo K.,Gojobori T. 
Genome Res. 13 (2003) 1572-9 [PMID: 12840036]
<Journal>
Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level.
Nishio Y.,Nakamura Y.,Usuda Y.,Sugimoto S.,Matsui K.,Kawarabayasi Y.,Kikuchi H.,Gojobori T.,Ikeo K. 
Mol. Biol. Evol. 21 (2004) 1683-91 [PMID: 15163767]
The genome stability in Corynebacterium species due to lack of the recombinational repair system.
Nakamura Y.,Nishio Y.,Ikeo K.,Gojobori T. 
Gene 317 (2003) 149-55 [PMID: 14604803]
Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables.
Fudou R.,Jojima Y.,Seto A.,Yamada K.,Kimura E.,Nakamatsu T.,Hiraishi A.,Yamanaka S. 
Int. J. Syst. Evol. Microbiol. 52 (2002) 1127-31 [PMID: 12148616]
References : Deferribacter desulfuricans SSM1T (= NBRC 101012T)
<About this genome>
Bacterial Lifestyle in a Deep-sea Hydrothermal Vent Chimney Revealed by the Genome Sequence of the Thermophilic Bacterium Deferribacter desulfuricans SSM1
Takaki Y, Shimamura S, Nakagawa S, Fukuhara Y, Horikawa H, Ankai A, Harada T, Hosoyama A, Oguchi A, Fukui S, Fujita N, Takami H, and Takai K. 
DNA res. 17 (2010)
References : Desulfovibrio magneticus RS-1T (= NBRC 104933T)
<About this genome>
Whole genome sequence of Desulfovibrio magneticus RS-1 revealed common gene clusters in magnetotactic bacteria.
Nakazawa H., Arakaki A., Narita-Yamada S., Yashiro I., Jinno K., Aoki N., Tsuruyama A., Okamura Y., Tanikawa S., Fujita N., Takeyama H., and Matsunaga T. 
Genome Res. [PMID: 19675025]
<Journal>
Proteomic analysis of irregular, bullet-shaped magnetosomes in the sulphate-reducing magnetotactic bacterium Desulfovibrio magneticus RS-1.
Matsunaga T., Nemoto M., Arakaki A., Tanaka M. 
Proteomics. 12 (2009) 3341-3352 [PMID: 19579222]
Formation of magnetite by bacteria and its application.
Arakaki A., Nakazawa H., Nemoto M., Mori T., and Matsunaga T. 
J R Soc Interface 26 (2008) 977-99 [PMID: 18559314]
Desulfovibrio magneticus sp. nov., a novel sulfate-reducing bacterium that produces intracellular single-domain-sized magnetite particles.
Sakaguchi T., Arakaki A., Matsunaga T. 
Int J Syst Evol Microbiol. 52 (2002) 215-221 [PMID: 11837306]
Cadmium recovery by a sulfate-reducing magnetotactic bacterium, Desulfovibrio magneticus RS-1, using magnetic separation.
Arakaki A., Takeyama H., Tanaka T., Matsunaga T. 
Appl Biochem Biotechnol. 98 (2002) 833-40 [PMID: 12018305]
Magnetite formation by a sulphate-reducing bacterium.
Sakaguchi T., Burgess J.G., Matsunaga T. 
Nature 365 (1993) 47-49
References : Gemmatimonas aurantiaca T-27T (= NBRC 100505T)
<Journal>
Carotenoids in the new phylum bacterium, Gemmatimonas aurantiaca: oscillol 2,2'-dirhamnoside, its synthesis, and its related genes.
Takaichi S, Maoka T, Takasaki K, Hanada S 
Microbiol [PMID: 19959572]
Gemmatimonas aurantiaca gen. nov., sp. nov., a gram-negative, aerobic, polyphosphate-accumulating micro-organism, the first cultured representative of the new bacterial phylum Gemmatimonadetes phyl. nov.
Zhang H, Sekiguchi Y, Hanada S, Hugenholtz P, Kim H, Kamagata Y, Nakamura K. 
Int. J. Syst. Evol. Microbiol. 53 (2003) 1155-1163 [PMID: 12892144]
References : Kocuria rhizophila DC2201 (= NBRC 103217)
<About this genome>
Complete genome sequence of the soil actinomycete Kocuria rhizophila
Takarada H, Sekine M, Kosugi H, Matsuo Y, Fujisawa T, Omata S, Kishi E, Shimizu A, Tsukatani N, TanikawaS, Fujita N, and Harayama S. 
J. Bacteriol. 190 (2008) 4139-46 [PMID: 18408034]
<Journal>
The cell structural properties of Kocuria rhizophila for aliphatic alcohol exposure
Fujita K, Hagishita T, Kurita S, Kawakura Y, Kobayashi Y, Matsuyama A and Iwahashi H. 
Enzyme and Microbial Technology 39 (2006) 511-518
Reclassification of ATCC 9341 from Micrococcus luteus to Kocuria rhizophila.
Tang, J. S., and P. M. Gillevet. 
Int. J. Syst. Evol. Microbiol. 53 (2003) 995-7 [PMID: 12892116]
References : Rhodococcus erythropolis PR4 (= NBRC 100887)
<About this genome>
Sequence analysis of three plasmids harboured in Rhodococcus erythropolis strain PR4.
Sekine M, Tanikawa S, Omata S, Saito M, Fujisawa T, Tsukatani N, Tajima T, Sekigawa T, Kosugi H, Matsuo Y, Nishiko R, Imamura K, Ito M, Narita H, Tago S, Fujita N, Harayama S. 
Environ Microbiol. 8 (2006) 334-46 [PMID: 16423019]
<Journal>
A comparison of various methods to predict bacterial predilection for organic solvents used as reaction media.
Hamada T, Sameshima Y, Honda K, Omasa T, Kato J, Ohtake H. 
J Biosci Bioeng. 106 (2008) 357-62 [PMID: 19000611]
Structural analysis of an acidic, fatty acid ester-bonded extracellular polysaccharide produced by a pristane-assimilating marine bacterium, Rhodococcus erythropolis PR4.
Urai M, Yoshizaki H, Anzai H, Ogihara J, Iwabuchi N, Harayama S, Sunairi M, Nakajima M. 
Carbohydr Res. 342 (2007) 933-42 [PMID: 17316581]
Structural analysis of mucoidan, an acidic extracellular polysaccharide produced by a pristane-assimilating marine bacterium, Rhodococcus erythropolis PR4.
Urai M, Yoshizaki H, Anzai H, Ogihara J, Iwabuchi N, Harayama S, Sunairi M, Nakajima M. 
Carbohydr Res. 342 (2007) 927-32 [PMID: 17316584]
Characterrization of four Rhodococcus alcohol dehydrogenase genes responsible for the oxidation of aromatic alcohols.
Peng X, Taki H, Komukai S, Sekine M, Kanoh K, Kasai H, Choi SK, Omata S, Tanikawa S, Harayama S, Misawa N. 
Appl Microbiol Biotechnol. 71 (2006) 824-32 [PMID: 16292529]
Construction of bacterial consortia that degrade Arabian light crude oil.
Komukai-Nanamura S, Sugiura K, Yamauchi-Inomata Y, Toki H, Vankateswaran K, Yamamoto S, Tanaka H, Harayama S. 
J Ferment Bioeng. 82 (1996) 570-574
References : Rhodococcus opacus B4
<Journal>
Utilization of hydrophobic bacterium Rhodococcus opacus B-4 as whole cell catalyst in anhydrous organic solvents.
Yamashita, S., M. Satoi, Y. Iwase, K. Honda, Y. Sameshima, T. Omasa, J. Kato, and H. Ohtake. 
Appl Microbiol Biotechnol 74 (2007) 761-767 [PMID: 17123076]
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse.
McLeod, M. P., R. L. Warren, W. W. Hsiao, N. Araki, M. Myhre, C. Fernandes, D. Miyazawa, W. Wong, A. L. Lillquist, D. Wang, M. Dosanjh, H. Hara, A. Petrescu, R. D. Morin, G. Yang, J. M. Stott, J. E. Schein, H. Shin, D. Smailus, A. S. Siddiqui, M. A. Marra, S. J. Jones, R. Holt, F. S. Brinkman, K. Miyauchi, M. Fukuda, J. E. Davies, W. W. Mohn, and L. D. Eltis. 
Proc Natl Acad Sci U S A. 103 (2006) 15582-7
Isolation and characterization of benzene-tolerant Rhodococcus opacus strains.
Na, K. S., A. Kuroda, N. Takiguchi, T. Ikeda, H. Ohtake, and J. Kato. 
J Biosci Bioeng 99 (2005) 378-82 [PMID: 16233805]
References : Staphylococcus aureus N315
<About this genome>
Whole genome sequencing of meticillin-resistant Staphylococcus aureus.
Kuroda M.,Ohta T.,Uchiyama I.,Baba T.,Yuzawa H.,Kobayashi I.,Cui L.,Oguchi A.,Aoki K.,Nagai Y.,Lian J.,Ito T.,Kanamori M.,Matsumaru H.,Maruyama A.,Murakami H.,Hosoyama A.,Mizutani-Ui Y.,Takahashi NK.,Sawano T.,Inoue R.,Kaito C.,Sekimizu K.,Hirakawa H.,Kuhara S.,Goto S.,Yabuzaki J.,Kanehisa M.,Yamashita A.,Oshima K.,Furuya K.,Yoshino C.,Shiba T.,Hattori M.,Ogasawara N.,Hayashi H.,Hiramatsu K. 
Lancet 357 (2001) 1225-40 [PMID: 11418146]
References : Staphylococcus aureus MW2
<About this genome>
Genome and virulence determinants of high virulence community-acquired MRSA.
Baba T.,Takeuchi F.,Kuroda M.,Yuzawa H.,Aoki K.,Oguchi A.,Nagai Y.,Iwama N.,Asano K.,Naimi T.,Kuroda H.,Cui L.,Yamamoto K.,Hiramatsu K. 
Lancet 359 (2002) 1819-27 [PMID: 12044378]
References : Staphylococcus haemolyticus JCSC1435
<About this genome>
Whole-genome sequencing of staphylococcus haemolyticus uncovers the extreme plasticity of its genome and the evolution of human-colonizing staphylococcal species.
Takeuchi F.,Watanabe S.,Baba T.,Yuzawa H.,Ito T.,Morimoto Y.,Kuroda M.,Cui L.,Takahashi M.,Ankai A.,Baba S.,Fukui S.,Lee JC.,Hiramatsu K. 
J. Bacteriol. 187 (2005) 7292-308 [PMID: 16237012]
<Journal>
Precise excision and self-integration of a composite transposon as a model for spontaneous large-scale chromosome inversion/deletion of the Staphylococcus haemolyticus clinical strain JCSC1435.
Watanabe S.,Ito T.,Morimoto Y.,Takeuchi F.,Hiramatsu K. 
J. Bacteriol. 189 (2007) 2921-5 [PMID: 17237177]
References : Streptomyces avermitilis MA-4680T (= NBRC 14893T)
<About this genome>
The Streptomyces genome--be prepared!
Hopwood DA. 
Nat. Biotechnol. 21 (2003) 505-6 [PMID: 12721573]
Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.
Ikeda H.,Ishikawa J.,Hanamoto A.,Shinose M.,Kikuchi H.,Shiba T.,Sakaki Y.,Hattori M.,Omura S. 
Nat. Biotechnol. 21 (2003) 526-31 [PMID: 12692562]
Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.
Omura S.,Ikeda H.,Ishikawa J.,Hanamoto A.,Takahashi C.,Shinose M.,Takahashi Y.,Horikawa H.,Nakazawa H.,Osonoe T.,Kikuchi H.,Shiba T.,Sakaki Y.,Hattori M. 
Proc. Natl. Acad. Sci. U.S.A. 98 (2001) 12215-20 [PMID: 11572948]
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