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3

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8

A
AAA ATPase, conserved site (1)
AAA ATPase, core (11)
AAA+ ATPase, core (101)
AAA-type ATPase chaperone, MoxR, predicted (5)
AB-hydrolase YheT, putative (1)
ABC transporter integral membrane type 1 (9)
ABC transporter, conserved site (47)
ABC transporter, lipoprotein release, LolD (1)
ABC transporter, macrolide export, ATP-binding domain (1)
ABC transporter, phosphate import, PstB (2)
ABC transporter, transmembrane region (8)
ABC transporter, transmembrane region, type 1 (9)
ABC transporter-like (56)
ABC-1 (1)
ABC-2 (2)
ABC-2 type transporter (2)
ADP-L-glycero-D-manno-heptose-6-epimerase (1)
ADP-glucose pyrophosphorylase, conserved site (1)
ADP-ribosylation/Crystallin J1 (1)
AICARFT/IMPCHase bienzyme (1)
AICARFT/IMPCHase bienzyme, formylation region (1)
AIR synthase related protein (3)
AIR synthase related protein, C-terminal (4)
AMP-dependent synthetase and ligase (13)
ANTAR (1)
AP endonuclease, family 1 (1)
AP endonuclease, family 2 (2)
APOBEC/CMP deaminase, zinc-binding (3)
ARF/SAR superfamily (2)
ATP dependent DNA ligase, C-terminal (1)
ATP dependent DNA ligase, central (1)
ATP phosphoribosyltransferase, catalytic region (1)
ATP-NAD kinase, PpnK-type (3)
ATP-NAD kinase, PpnK-type, all-beta (1)
ATP-NAD/AcoX kinase (1)
ATP-binding region, ATPase-like (72)
ATP-citrate lyase/succinyl-CoA ligase (2)
ATP-citrate lyase/succinyl-CoA ligase, active site (1)
ATP-cone (1)
ATP-dependent DNA ligase, conserved site (4)
ATP-dependent phosphofructokinase, prokaryotic (1)
ATP-grasp fold (11)
ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type (4)
ATP-grasp fold, subdomain 1 (3)
ATP-grasp fold, subdomain 2 (8)
ATP-grasp fold, succinyl-CoA synthetase-type (1)
ATP:guanido phosphotransferase (1)
ATPase associated with various cellular activities, AAA-2 (5)
ATPase associated with various cellular activities, AAA-3 (5)
ATPase associated with various cellular activities, AAA-4 (1)
ATPase, BadF/BadG/BcrA/BcrD type (1)
ATPase, F0 complex, subunit A (1)
ATPase, F0 complex, subunit B, bacterial (1)
ATPase, F0 complex, subunit B/B', bacterial and chloroplast (1)
ATPase, F0 complex, subunit C (1)
ATPase, F0 complex, subunit C, bacterial and chloroplast (1)
ATPase, F0/V0 complex, subunit C (2)
ATPase, F1 complex, OSCP/delta subunit (1)
ATPase, F1 complex, alpha subunit (1)
ATPase, F1 complex, alpha subunit, C-terminal (1)
ATPase, F1 complex, beta subunit (1)
ATPase, F1 complex, delta/epsilon subunit (1)
ATPase, F1 complex, gamma subunit (1)
ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (2)
ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (3)
ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding (6)
ATPase, P type cation/copper-transporter (2)
ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (6)
Abortive infection protein (3)
Acetamidase/Formamidase (1)
Acetate and butyrate kinase (1)
Acetate kinase (1)
Acetate--CoA ligase (1)
Acetoacetyl-CoA synthase (1)
Acetoin reductase (1)
Acetyl xylan esterase (1)
Acetyl-CoA biotin carboxyl carrier (1)
Acetyl-CoA carboxylase carboxyl transferase, beta subunit (1)
Acetyl-CoA carboxylase, alpha subunit (1)
Acetyl-CoA carboxylase, biotin carboxylase (2)
Acetyl-coenzyme A carboxyltransferase, C-terminal (3)
Acetyl-coenzyme A carboxyltransferase, N-terminal (3)
Acetylglutamate kinase (1)
Acetylornithine and succinylornithine aminotransferase (1)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase (2)
Acidobacterial duplicated orphan permease (3)
Aconitase A/isopropylmalate dehydratase small subunit, swivel (1)
Aconitase-like core (1)
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (1)
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (1)
Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomains 1 and 3 (1)
Aconitase/3-isopropylmalate dehydratase, swivel (1)
Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (1)
Aconitase/iron regulatory protein 2 (1)
Acriflavin resistance protein (14)
Activator of Hsp90 ATPase homologue 1-like (8)
Acyl carrier protein (ACP) (1)
Acyl carrier protein-like (6)
Acyl transferase (1)
Acyl transferase region (1)
Acyl transferase/acyl hydrolase/lysophospholipase (5)
Acyl-CoA N-acyltransferase (23)
Acyl-CoA dehydrogenase, N-terminal (6)
Acyl-CoA dehydrogenase, conserved site (4)
Acyl-CoA dehydrogenase/oxidase C-terminal (7)
Acyl-CoA dehydrogenase/oxidase, N-terminal (7)
Acyl-CoA dehydrogenase/oxidase, central region (7)
Acyl-CoA dehydrogenase/oxidase, middle and N-terminal (7)
Acyl-CoA oxidase/dehydrogenase, type 1 (7)
Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (7)
Acyl-CoA reductase (1)
Acyl-CoA thioesterase (1)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (1)
Acyl-protein synthetase, LuxE (1)
Acylneuraminate cytidylyltransferase (1)
Acylphosphatase (1)
Ada DNA repair, metal-binding (1)
Addiction module antidote protein, HI1420 (1)
Addiction module killer protein, HI1419 (1)
Adenine phosphoribosyl transferase (1)
Adenosine deaminase (1)
Adenosine/AMP deaminase (1)
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR (2)
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT and PduO type (1)
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal (1)
Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like (1)
Adenosylmethionine--8-amino-7-oxononanoate aminotransferase (1)
Adenylate cyclase (1)
Adenylate cyclase-associated CAP (1)
Adenylate kinase (1)
Adenylate kinase, subfamily (1)
Adenylosuccinate lyase (1)
Adenylosuccinate synthetase (1)
Adenylyl cyclase class-3/4/guanylyl cyclase (1)
Adipokinetic hormone, conserved site (1)
Alanine dehydrogenase and pyridine nucleotide transhydrogenase (1)
Alanine dehydrogenase/PNT, C-terminal (1)
Alanine dehydrogenase/PNT, N-terminal (1)
Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 (1)
Alanine racemase region (1)
Alanine racemase, C-terminal (1)
Alanine racemase, N-terminal (3)
Alanine racemase/group IV decarboxylase, C-terminal (2)
Alanyl-tRNA synthetase, class IIc (2)
Alcohol dehydrogenase GroES-like (9)
Alcohol dehydrogenase superfamily, zinc-containing (9)
Alcohol dehydrogenase, zinc-binding (9)
Alcohol dehydrogenase, zinc-containing, conserved site (6)
Aldehyde dehydrogenase (9)
Aldehyde dehydrogenase predicted, duplicated region (1)
Aldehyde dehydrogenase, C-terminal (1)
Aldehyde dehydrogenase, N-terminal (9)
Aldehyde dehydrogenase, conserved site (11)
Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead (3)
Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding (4)
Aldehyde/histidinol dehydrogenase (11)
Aldo/keto reductase (8)
Aldolase-type TIM barrel (42)
Alkaline phosphatase (3)
Alkaline phosphatase-like, alpha/beta/alpha (2)
Alkaline-phosphatase-like, core domain (7)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (8)
Alkylhydroperoxidase AhpD core (2)
Alpha-D-phosphohexomutase, C-terminal (3)
Alpha-D-phosphohexomutase, alpha/beta/alpha I, II and III (3)
Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (3)
Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (3)
Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (3)
Alpha-D-phosphohexomutase, conserved site (3)
Alpha-amylase, C-terminal all beta (1)
Alpha-glucan phosphorylase (1)
Alpha-helical ferredoxin (6)
Alpha-hydroxy acid dehydrogenase, FMN-dependent (1)
Alpha/beta hydrolase fold-1 (20)
Alpha/beta hydrolase fold-3 (1)
Amidase signature enzyme (7)
Amidase, hydantoinase/carbamoylase (1)
Amidohydrolase 1 (14)
Amidohydrolase 2 (4)
Amidohydrolase 3 (8)
Amidophosphoribosyl transferase (1)
Amine oxidase (1)
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (1)
Amino acid adenylation (2)
Amino acid permease-associated region (7)
Amino acid-binding ACT (4)
Amino acid/peptide transporter (1)
Amino acid/polyamine transporter I (7)
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (6)
Aminoacyl-tRNA synthetase, class I (M) (2)
Aminoacyl-tRNA synthetase, class I, anticodon-binding (1)
Aminoacyl-tRNA synthetase, class I, conserved site (15)
Aminoacyl-tRNA synthetase, class II (9)
Aminoacyl-tRNA synthetase, class II (D, K and N) (3)
Aminoacyl-tRNA synthetase, class II (G, H, P and S) (5)
Aminoacyl-tRNA synthetase, class Ia (2)
Aminoacyl-tRNA synthetase, class Ib (3)
Aminodeoxychorismate lyase (1)
Aminoglycoside phosphotransferase (1)
Aminotransferase class-III (6)
Aminotransferase, class I and II (12)
Aminotransferase, class IV (2)
Aminotransferase, class V/Cysteine desulfurase (11)
Aminotransferase, class-II, pyridoxal-phosphate binding site (5)
Aminotransferases, class-I, pyridoxal-phosphate-binding site (2)
Ammonium transporter (1)
Ankyrin (8)
Annexin (1)
Annexin IV (1)
Anthranilate phosphoribosyl transferase (1)
Anthranilate synthase component I (1)
Anthranilate synthase component I and chorismate binding protein (2)
Anthranilate synthase component I, N-terminal (1)
Anti-sigma factor antagonist (1)
Antibiotic biosynthesis monooxygenase (3)
Anticodon-binding (4)
ApaG (1)
ApbE-like lipoprotein (1)
Apoptosis regulator Bcl-2, BH (1)
Aquaporin (1)
AraC protein, arabinose-binding/dimerisation (1)
ArgE/DapE/ACY1/CPG2/YscS, conserved site (5)
ArgK protein (2)
Arginase, subgroup (1)
Arginine biosynthesis protein ArgJ (1)
Arginine decarboxylase (1)
Arginine repressor (1)
Argininosuccinate lyase (1)
Argininosuccinate synthase (1)
Arginyl tRNA synthetase, class Ic, N-terminal (1)
Arginyl-tRNA synthetase, class Ic (1)
Arginyl-tRNA synthetase, class Ic, core (1)
Armadillo-like helical (9)
Armadillo-type fold (13)
Aromatic amino acid beta-eliminating lyase/threonine aldolase (2)
Arsenate reductase-like (2)
Arsenical-resistance protein ACR3 (1)
Asparaginase/glutaminase (1)
Asparagine synthase (1)
Asparagine synthase, glutamine-hydrolyzing (1)
Asparaginyl-tRNA synthetase, class IIb (1)
Aspartate ammonia-lyase (1)
Aspartate carbamoyltransferase, eukaryotic (1)
Aspartate decarboxylase-like fold (3)
Aspartate kinase region (2)
Aspartate-semialdehyde dehydrogenase (1)
Aspartate-semialdehyde dehydrogenase, peptidoglycan lacking (1)
Aspartate/glutamate/uridylate kinase (5)
Aspartate/homoserine dehydrogenase, NAD-binding (2)
Aspartate/ornithine carbamoyltransferase (2)
Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region (2)
Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (2)
Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type (1)

B
B3/B4 tRNA-binding domain (1)
BAAT/Acyl-CoA thioester hydrolase C-terminal (1)
BNR repeat (8)
BPG-independent PGAM, N-terminal (1)
BRCT (1)
Bacitracin resistance protein BacA (1)
Bacterial DNA polymerase III, alpha subunit (2)
Bacterial DNA recombination protein RuvA (1)
Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (1)
Bacterial Ig-like, group 1 (4)
Bacterial Ig-like, group 2 (19)
Bacterial Na+/H+ antiporter (1)
Bacterial RecJ exonuclease (1)
Bacterial SH3-like region (1)
Bacterial TonB-dependent receptor (2)
Bacterial bifunctional deaminase-reductase, C-terminal (4)
Bacterial chromosomal replication initiator protein, DnaA (1)
Bacterial export protein FliQ, family 3 (1)
Bacterial extracellular solute-binding protein, family 3 (2)
Bacterial extracellular solute-binding protein, family 5 (4)
Bacterial extracellular solute-binding, family 1 (1)
Bacterial inner-membrane translocator (4)
Bacterial lipid A biosynthesis acyltransferase (1)
Bacterial luciferase-like (3)
Bacterial methyltransferase (1)
Bacterial pantothenate kinase (1)
Bacterial regulatory protein GntR, HTH (2)
Bacterial regulatory protein, ArsR (13)
Bacterial regulatory protein, Crp (1)
Bacterial regulatory protein, LacI (1)
Bacterial regulatory protein, LuxR (9)
Bacterial regulatory protein, LysR (4)
Bacterial regulatory protein, MarR (8)
Bacterial regulatory protein, MerR (4)
Bacterial ribonuclease P protein (1)
Bacterial sec-independent translocation protein mttA/Hcf106 (1)
Bacterial sugar transferase (1)
Bacterial surface antigen (D15) (4)
Bacterial transcriptional activator domain (2)
Bacterial transferase hexapeptide repeat (8)
Bacterial transketolase (1)
Bacterial transport system permease protein (4)
Bacterial virulence (1)
Band 7 protein (2)
Basic membrane lipoprotein (2)
Benzoate membrane transport protein (1)
Beta tubulin, autoregulation binding site (3)
Beta-Ig-H3/fasciclin (2)
Beta-N-acetylhexosaminidase-like (1)
Beta-grasp fold, ferredoxin-type (11)
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ (1)
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (2)
Beta-ketoacyl synthase (3)
Beta-ketoacyl synthase, C-terminal (3)
Beta-ketoacyl synthase, N-terminal (3)
Beta-ketoacyl-acyl carrier protein synthase III (FabH) (2)
Beta-ketoadipyl CoA thiolase (1)
Beta-lactamase-like (13)
Beta-lactamase-related (22)
Beta-lactamase-type transpeptidase fold (29)
Bifunctional aspartokinase/homoserine dehydrogenase I (1)
Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (1)
Bile acid:sodium symporter (1)
Binding-protein-dependent transport systems inner membrane component (12)
Biopolymer transport protein ExbD/TolR (3)
Biotin and thiamin synthesis associated (1)
Biotin carboxylase, C-terminal (2)
Biotin carboxylation region (2)
Biotin synthase (1)
Biotin--acetyl-CoA-carboxylase ligase (1)
Biotin-binding site (1)
Biotin/lipoate A/B protein ligase (3)
Biotin/lipoyl attachment (5)
Blue (type 1) copper domain (2)
Bor (1)
Branched-chain amino acid aminotransferase I (1)

C
C-5 cytosine-specific DNA methylase (2)
C-type lectin fold (1)
CDP-alcohol phosphatidyltransferase (4)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (2)
CDP-diacylglycerol--serine O-phosphatidyltransferase (1)
CHASE (1)
CHASE3 (1)
CMP/dCMP deaminase, zinc-binding (3)
CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (1)
CTP synthase (1)
CTP synthase, N-terminal (1)
Calcium-binding EF-hand (11)
Camphor resistance CrcB protein (1)
Carbamoyl phosphate synthase, large subunit, N-terminal (3)
Carbamoyl phosphate synthase, large subunit, glutamine-dependent (1)
Carbamoyl phosphate synthase, small subunit (1)
Carbamoyl phosphate synthase, small subunit, N-terminal (1)
Carbamoyl phosphate synthetase, large subunit, ATP-binding (5)
Carbamoyl phosphate synthetase, large subunit, oligomerisation (1)
Carbohydrate kinase, FGGY (1)
Carbohydrate kinase, predicted (1)
Carbohydrate-binding and sugar hydrolysis (1)
Carbohydrate-binding family 9/cellobiose dehydrogenase, cytochrome (7)
Carbohydrate-binding-like fold (18)
Carbohydrate/puine kinase, PfkB, conserved site (2)
Carbohydrate/purine kinase (2)
Carbon starvation protein CstA (1)
Carbon storage regulator (1)
Carbonic anhydrase (2)
Carbonic anhydrase, prokaryotic-like, conserved site (2)
Carboxyl transferase (3)
Carboxylyase-related (1)
Carboxymuconolactone decarboxylase (3)
Carboxypeptidase, regulatory region (14)
Carboxypeptidase-like, regulatory region (50)
Catalase-peroxidase haem (1)
Catalytic domain of components of various dehydrogenase complexes (3)
Cation efflux protein (3)
Cationic amino acid transporter (3)
CcmE/CycJ protein (1)
Cell cycle control PP-loop ATPase MesJ/YaeO (1)
Cell cycle protein (2)
Cell division ATP-binding protein FtsE (1)
Cell division protein FtsA (1)
Cell division protein FtsQ (1)
Cell division protein FtsZ, N-terminal (1)
Cell division protein ZapA-like (1)
Cell division transporter substrate-binding protein FtsY (1)
Cell divisionFtsK/SpoIIIE (1)
Cell shape determining protein MreB/Mrl (1)
Cell wall hydrolase/autolysin, catalytic (2)
Cellulosome enzyme, dockerin type I, calcium-binding motif (1)
Chaperone DnaJ (1)
Chaperone DnaJ, C-terminal (2)
Chaperone DnaK (1)
Chaperonin ClpB (1)
Chaperonin Cpn10 (2)
Chaperonin Cpn60 (1)
Chaperonin Cpn60/TCP-1 (1)
Chaperonin GroEL (1)
Chaperonin clpA/B (3)
CheC-like protein (1)
CheW-like protein (8)
CheY-like (84)
Chemotaxis methyl-accepting receptor, signalling (11)
Chemotaxis protein CheD (2)
Chitinase II (2)
Chorismate binding, C-terminal (2)
Chorismate mutase (2)
Chorismate synthase (1)
Chromosomal replication initiator, DnaA (2)
Chromosomal replication initiator, DnaA C-terminal (1)
Chromosome segregation protein SMC (1)
CinA, C-terminal (1)
Citrate synthase, type II (1)
Citrate synthase-like (1)
Citrate synthase-like, core (1)
Citrate synthase-like, large alpha subdomain (1)
Class I peptide chain release factor (2)
Class II aldolase/adducin, N-terminal (1)
Clp, N-terminal (3)
ClpX, ATPase regulatory subunit (1)
CoA-binding (3)
CoA-transferase family III (2)
CobB/CobQ glutamine amidotransferase (1)
CobB/CobQ-like glutamine amidotransferase (2)
Cobalamin (vitamin B12) biosynthesis CbiB (1)
Cobalamin (vitamin B12) biosynthesis CbiX (1)
Cobalamin (vitamin B12) biosynthesis CobS, cobalamin-5-phosphate synthase (1)
Cobalamin (vitamin B12) biosynthesis CobW-like (3)
Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (2)
Cobalamin (vitamin B12)-binding (4)
Cobalamin (vitamin B12)-dependent enzyme, catalytic (2)
Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain (2)
Cobinamide kinase/cobinamide phosphate guanyltransferase (1)
Cobyric acid synthase CobQ (1)
Cobyrinic acid a,c-diamide synthase (4)
CocE/NonD hydrolase (6)
Coenzyme A biosynthesis protein (1)
Cof protein (1)
Cold shock protein (3)
Cold shock, CspA (2)
Cold-shock protein, DNA-binding (2)
Collagen triple helix repeat (3)
ComEC/Rec2-related protein (1)
Competence protein ComEC/Rec2 (1)
Competence-induced protein CinA (1)
Concanavalin A-like lectin/glucanase (1)
Concanavalin A-like lectin/glucanase, subgroup (1)
Condensation domain (1)
Conserved TM helix (1)
Conserved hypothetical protein CHP00011 (1)
Conserved hypothetical protein CHP00048 (1)
Conserved hypothetical protein CHP00092 (1)
Conserved hypothetical protein CHP00095 (2)
Conserved hypothetical protein CHP00103 (1)
Conserved hypothetical protein CHP00159 (1)
Conserved hypothetical protein CHP00255 (1)
Conserved hypothetical protein CHP00374 (2)
Conserved hypothetical protein CHP00423 (2)
Conserved hypothetical protein CHP00701 (1)
Conserved hypothetical protein CHP00730 (2)
Conserved hypothetical protein CHP01125 (1)
Conserved hypothetical protein CHP02241, phage tail region protein (2)
Conserved hypothetical protein CHP02243 (1)
Conserved hypothetical protein CHP02453 (1)
Conserved hypothetical protein, ArsC related (1)
Conserved hypothetical protein, YfcH (1)
Copper amine oxidase-like, N-terminal (1)
Copper centre Cu(A) (1)
Copper chaperone SCO1/SenC (2)
Copper resistance D (2)
Copper resistance protein CopC, core (2)
Copper resistance protein CopC/internalin, immunoglobulin-like (2)
Coproporphyrinogen III oxidase (1)
Creatinase (1)
Creatininase (4)
Crossover junction endodeoxyribonuclease RuvC (1)
Crotonase, core (8)
CsbD-like (1)
Cupin 2, conserved barrel (4)
Cupin, RmlC-type (14)
Cupredoxin (7)
Curli production assembly/transport component CsgG (1)
CutC (1)
Cyanophycinase (1)
Cyclic nucleotide-binding (2)
Cyclodeaminase/cyclohydrolase (1)
Cyclophilin-like (5)
Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (7)
Cystathionine beta-synthase, core (9)
Cysteine desulfurase, NifS (1)
Cysteine desulfurase, SufS (1)
Cysteine desulfurase-related (1)
Cysteine synthase A (1)
Cysteine synthase B (1)
Cysteine synthase K/M (2)
Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (1)
Cysteine-rich region, CCG (2)
Cysteinyl-tRNA synthetase, class Ia (1)
Cysteinyl-tRNA synthetase, class Ia, C-terminal (1)
Cysteinyl-tRNA synthetase, class Ia, DALR (1)
Cysteinyl-tRNA synthetase, class Ia, N-terminal (1)
Cytidine deaminase, homotetrameric (1)
Cytidine deaminase-like (3)
Cytidylate kinase (1)
Cytidylate kinase region (1)
Cytidyltransferase-related (4)
Cytidylyltransferase (3)
Cytochrome C oxidase subunit II, transmembrane region (1)
Cytochrome C oxidase subunit II-like, transmembrane region (1)
Cytochrome C oxidase, monohaem subunit/FixO (1)
Cytochrome P450 (2)
Cytochrome b/b6 (1)
Cytochrome b/b6, C-terminal (1)
Cytochrome b/b6, N-terminal (1)
Cytochrome c and b562 (2)
Cytochrome c assembly protein (2)
Cytochrome c assembly protein, transmembrane region (2)
Cytochrome c oxidase cbb3 type, accessory protein FixG (1)
Cytochrome c oxidase cbb3-type, subunit I (1)
Cytochrome c oxidase subunit II C-terminal (2)
Cytochrome c oxidase, subunit I (3)
Cytochrome c oxidase, subunit I bacterial type (1)
Cytochrome c oxidase, subunit II (1)
Cytochrome c oxidase, subunit III (2)
Cytochrome c, class I (5)
Cytochrome c, monohaem (14)
Cytochrome c-type biogenesis protein CcmB (1)
Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (6)
Cytochrome oxidase assembly (1)
Cytochrome oxidase maturation protein cbb3-type (1)
Cytotoxic necrotizing factor-like, catalytic (1)

D
D,D-heptose 7-phosphate kinase (1)
D-3-phosphoglycerate dehydrogenase (1)
D-3-phosphogylcerate Dehydrogenase (1)
D-alanine--D-alanine ligase (1)
D-alanine--D-alanine ligase, C-terminal (1)
D-alanine--D-alanine ligase, N-terminal (1)
D-alanine--D-alanine ligase/VANA/B/C, conserved site (1)
D-aminoacylase, C-terminal (5)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (6)
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region (2)
D-tyrosyl-tRNA(Tyr) deacylase (1)
DAHP synthetase I/KDSA (4)
DALR anticodon binding (1)
DEAD-like helicase, N-terminal (17)
DEAD/H associated (1)
DGPFAETKE (2)
DHAP synthase, class 1 (1)
DHBP synthase RibB (1)
DHBP synthase RibB-like alpha/beta domain (4)
DNA breaking-rejoining enzyme, catalytic core (6)
DNA glycosylase (4)
DNA glycosylase, G/T mismatch (1)
DNA glycosylase/AP lyase (1)
DNA glycosylase/AP lyase and isoleucyl tRNA synthetase, zinc finger domain (1)
DNA glycosylase/AP lyase, H2TH DNA-binding (3)
DNA glycosylase/AP lyase, catalytic domain (3)
DNA glycosylase/AP lyase, zinc finger domain (3)
DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site (2)
DNA gyrase, subunit A (1)
DNA gyrase, subunit B (1)
DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel (1)
DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal (1)
DNA helicase, ATP-dependent, RecQ type (2)
DNA helicase, DnaB type (1)
DNA helicase, DnaB-like, C-terminal (2)
DNA helicase, DnaB-like, N-terminal (1)
DNA helicase, Holliday junction RuvA type, C-terminal domain III (1)
DNA helicase, Holliday junction RuvA type, domain I, bacterial (1)
DNA helicase, Holliday junction RuvB type (1)
DNA helicase, Holliday junction RuvB type, C-terminal (1)
DNA helicase, Holliday junction RuvB type, N-terminal (1)
DNA helicase, UvrD-like, C terminal (3)
DNA helicase, UvrD/REP type (3)
DNA ligase, N-terminal (1)
DNA mismatch repair protein (1)
DNA mismatch repair protein MutS, C-terminal (2)
DNA mismatch repair protein MutS, N-terminal (1)
DNA mismatch repair protein MutS, clamp (1)
DNA mismatch repair protein MutS, connector (1)
DNA mismatch repair protein MutS, core (2)
DNA mismatch repair protein MutS, type 1 (1)
DNA mismatch repair protein MutS, type 2 (1)
DNA mismatch repair protein MutS-like, N-terminal (1)
DNA mismatch repair protein, C-terminal (1)
DNA mismatch repair protein, N-terminal (1)
DNA mismatch repair, conserved site (1)
DNA photolyase, FAD-binding/Cryptochrome, C-terminal (1)
DNA photolyase, N-terminal (1)
DNA photolyase, class 2 (1)
DNA polymerase A (1)
DNA polymerase III clamp loader subunit, C-terminal (2)
DNA polymerase III, alpha subunit (2)
DNA polymerase III, beta chain (1)
DNA polymerase III, delta (1)
DNA polymerase III, delta subunit (1)
DNA polymerase III, epsilon subunit (1)
DNA polymerase III, subunits gamma and tau (1)
DNA primase, DnaG (1)
DNA primase, catalytic core, N-terminal (1)
DNA repair Rad51/transcription factor NusA, alpha-helical (1)
DNA repair protein RadA (1)
DNA repair protein RadC (1)
DNA repair protein RecN (1)
DNA topoisomerase I, bacterial-type (1)
DNA topoisomerase, type IA, DNA-binding (1)
DNA topoisomerase, type IA, central (1)
DNA topoisomerase, type IA, central region, subdomain 1 (1)
DNA topoisomerase, type IA, central region, subdomain 3 (1)
DNA topoisomerase, type IA, core (1)
DNA topoisomerase, type IA, domain 2 (1)
DNA topoisomerase, type IA, zn finger (1)
DNA topoisomerase, type IIA, central (2)
DNA topoisomerase, type IIA, subunit A or C-terminal (1)
DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta (1)
DNA topoisomerase, type IIA, subunit A, alpha-helical (1)
DNA topoisomerase, type IIA, subunit B or N-terminal (1)
DNA topoisomerase, type IIA, subunit B or N-terminal, alpha-beta (1)
DNA topoisomerase, type IIA, subunit B, C-terminal (1)
DNA topoisomerase, type IIA, subunit B, region 2 (1)
DNA-binding protein Dps (2)
DNA-directed DNA polymerase, family A (1)
DNA-directed DNA polymerase, family B (3)
DNA-directed DNA polymerase, family B, conserved region (1)
DNA-directed DNA polymerase, family B, exonuclease (1)
DNA-directed DNA polymerase, family X (1)
DNA-directed RNA polymerase, RBP11-like (1)
DNA-directed RNA polymerase, RpoA/D/Rpb3-type (1)
DNA-directed RNA polymerase, alpha subunit (1)
DNA-directed RNA polymerase, beta subunit, bacterial-type (1)
DNA-directed RNA polymerase, dimerisation (1)
DNA-directed RNA polymerase, insert (1)
DNA-directed RNA polymerase, subunit 2 (1)
DNA-directed RNA polymerase, subunit 2, domain 6 (1)
DNA-directed RNA polymerase, subunit beta-prime (1)
DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (1)
DNA/RNA helicase, C-terminal (18)
DNA/RNA helicase, DEAD/DEAH box type, N-terminal (10)
DNA/RNA non-specific endonuclease (1)
DNA/pantothenate metabolism flavoprotein, C-terminal (1)
DR1885-like metal-binding protein (2)
DSBA oxidoreductase (3)
DbpA, RNA-binding (2)
DegT/DnrJ/EryC1/StrS aminotransferase (2)
Dehydrogenase, E1 component (4)
Dehydrogenase, multihelical (11)
Dehydroquinase, class II (1)
Delta 1-pyrroline-5-carboxylate reductase (1)
Delta-1-pyrroline-5-carboxylate dehydrogenase 1 (1)
Deoxycytidine triphosphate deaminase (1)
Deoxyhypusine synthase (1)
Deoxyribonuclease I-like (1)
Deoxyribonuclease, TatD (1)
Deoxyribonuclease, TatD Mg-dependent (1)
Deoxyribonuclease, TatD Mg-dependent, prokaryote (1)
Deoxyribonuclease, TatD-related (1)
Deoxyribonuclease/rho motif-related TRAM (2)
Deoxyribose-phosphate aldolase (1)
Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase (1)
Deoxyxylulose-5-phosphate synthase (1)
Dephospho-CoA kinase (1)
Dethiobiotin synthase (1)
Di-haem cytochrome c peroxidase (3)
Di-haem cytochrome, transmembrane (1)
Di-trans-poly-cis-decaprenylcistransferase (2)
Diacylglycerol kinase, catalytic region (2)
Diaminopimelate decarboxylase (1)
Diaminopimelate epimerase (1)
Dienelactone hydrolase (3)
Dihydrodipicolinate reductase (1)
Dihydrodipicolinate reductase, bacterial and plant (1)
Dihydrodipicolinate synthase subfamily (1)
Dihydrodipicolinate synthetase (2)
Dihydrolipoamide dehydrogenase (2)
Dihydrolipoamide succinyltransferase (1)
Dihydroorotase multifunctional complex type (1)
Dihydroorotase, conserved site (1)
Dihydroorotate dehydrogenase, class 1, core (1)
Dihydroorotate dehydrogenase, classes 1 and 2 (1)
Dihydroorotate dehydrogenase, core (1)
Dihydropteroate synthase, DHPS (1)
Dihydropteroate synthase-like (2)
Dihydrouridine synthase TIM-barrel, NifR3 (1)
Dihydrouridine synthase, DuS (1)
Dihydroxy-acid and 6-phosphogluconate dehydratase (2)
Dihydroxy-acid dehydratase (1)
Dimeric alpha-beta barrel (10)
DinB (5)
DivIVA (1)
Divalent cation transporter (1)
Divalent ion tolerance protein, CutA1 (1)
Double-stranded RNA-binding-like (1)
Double-transmembrane region, N-terminal (3)
DoxX (3)
Drug resistance transporter EmrB/QacA subfamily (1)
Duplicated hybrid motif (4)
Dynein light chain-related (2)

E
E1-E2 ATPase-associated region (5)
E3 binding (3)
EAL (6)
Electron transfer flavoprotein, alpha subunit (1)
Electron transfer flavoprotein, alpha subunit, C-terminal (1)
Electron transfer flavoprotein, alpha/beta-subunit, N-terminal (2)
Electron transfer flavoprotein, beta subunit (1)
Elongation factor G, III and V (6)
Elongation factor P, C-terminal (1)
Elongator protein 3/MiaB/NifB (11)
Endonuclease I (1)
Endonuclease III, conserved site-2 (2)
Endonuclease III, iron-sulphur binding, conserved site-1 (2)
Endonuclease III/Nth (1)
Endonuclease/exonuclease/phosphatase (6)
Endoribonuclease L-PSP (6)
Endoribonuclease L-PSP/chorismate mutase-like (6)
EngC GTPase (1)
Enolase (1)
Enoyl-[acyl-carrier-protein] reductase (NADH) (1)
Enzymatic protein of unknown function (1)
ErfK/YbiS/YcfS/YnhG (1)
Esterase, SGNH hydrolase-type (6)
Esterase, SGNH hydrolase-type, subgroup (2)
Esterase/lipase (1)
Excinuclease ABC, A subunit (3)
Excinuclease ABC, B subunit (1)
Excinuclease ABC, C subunit (1)
Excinuclease ABC, C subunit, C-terminal (1)
Excinuclease ABC, C subunit, N-terminal (3)
Exodeoxyribonuclease III xth (1)
Exodeoxyribonuclease V, RecC subunit (1)
Exodeoxyribonuclease V, alpha subunit (1)
Exodeoxyribonuclease V, beta subunit (1)
Exoenzyme S synthesis protein B/queuosine synthesis (1)
Exonuclease (2)
Exonuclease VII, large subunit (1)
Exonuclease VII, small subunit (1)
Exonuclease, RNase T and DNA polymerase III (2)
Exonuclease, phage-type/RecB, C-terminal (2)
Exopolysaccharide synthesis protein (1)
Exoribonuclease, phosphorolytic domain 1 (2)
Exoribonuclease, phosphorolytic domain 2 (2)
Exosortase, EpsH, 8 transmembrane (1)
Extracellular ligand-binding receptor (2)

F
FAD dependent oxidoreductase (8)
FAD linked oxidase, N-terminal (5)
FAD synthetase (1)
FAD-binding 9, siderophore-interacting (1)
FAD-binding, type 2 (5)
FAD-binding, type 2, subdomain 1 (4)
FAD-dependent glycerol-3-phosphate dehydrogenase (1)
FAD-dependent pyridine nucleotide-disulphide oxidoreductase (9)
FAD-linked oxidase, C-terminal (3)
FAD-linked oxidase, FAD-binding, subdomain 2 (2)
FAD-linked oxidase-like, C-terminal (3)
FAD/NAD-linked reductase, dimerisation (2)
FMN-binding (1)
FMN-binding split barrel (2)
FMN-binding split barrel, related (3)
FMN-dependent alpha-hydroxy acid dehydrogenase (1)
FMN-dependent dehydrogenase (1)
FRG domain (1)
Fatty acid desaturase, type 1 (1)
Fatty acid desaturase, type 2 (1)
Fatty acid synthesis plsX protein (1)
Fe(2+)-dicitrate sensor, transmembrane component (2)
Fe(II) trafficking protein YggX (1)
Fe-S type hydro-lyases tartrate/fumarate alpha region (1)
Fe-S type hydro-lyases tartrate/fumarate beta region (1)
FeS cluster biogenesis (1)
FeS cluster insertion (1)
FeS cluster insertion, C-terminal, conserved site (1)
FecR protein (3)
Ferredoxin (9)
Ferredoxin reductase-type FAD-binding domain (2)
Ferric reductase-like transmembrane component, N-terminal (1)
Ferric uptake regulator, CjrA, predicted (1)
Ferric-uptake regulator (2)
Ferritin and Dps (3)
Ferritin, N-terminal (1)
Ferritin-like (1)
Ferritin-related (5)
Ferritin/ribonucleotide reductase-like (11)
Ferrochelatase (1)
Ferrous iron transport B, C-terminal (1)
Ferrous iron transport protein B (1)
Ferrous iron transport protein B, N-terminal (1)
Ferrous iron transporter, FeoA subunit (2)
Fibronectin, type III (1)
Fibronectin, type III-like fold (3)
Filamentation induced by cAMP protein Fic (1)
Filamin/ABP280 repeat-like (1)
Fimbrial assembly (2)
Flagella basal body P-ring formation protein FlgA (1)
Flagellar FliF M-ring protein (1)
Flagellar L-ring protein (1)
Flagellar M-ring C-terminal (1)
Flagellar P-ring protein (1)
Flagellar assembly factor FliW (1)
Flagellar basal body FlaE (1)
Flagellar basal body rod protein (5)
Flagellar basal body-associated protein FliL (1)
Flagellar basal-body rod FlgG (1)
Flagellar basal-body rod protein FlgC (1)
Flagellar biosynthesis protein FlhA (1)
Flagellar export FliJ (1)
Flagellar hook capping protein (1)
Flagellar hook-associated 2, C-terminal (1)
Flagellar hook-associated protein (1)
Flagellar hook-associated protein 2, N-terminal (1)
Flagellar hook-basal body complex protein FliE (1)
Flagellar motor protein MotA, conserved site (1)
Flagellar motor switch FliN (1)
Flagellar motor switch protein FliG (1)
Flagellar motor switch protein FliG, alpha-helical (3)
Flagellar motor switch protein FliM (1)
Flagellar protein FliS (1)
Flagellar protein export ATPase FliI (1)
Flagellar transport protein FliP (1)
Flagellin hook IN (1)
Flagellin, C-terminal (1)
Flagellin, N-terminal (1)
Flavin reductase-like, FMN-binding (1)
Flavoprotein (2)
Folate-binding, YgfZ (1)
Folylpolyglutamate synthetase (2)
Forkhead-associated (2)
Formate C-acetyltransferase glycine radical (1)
Formate dehydrogenase, alpha subunit (1)
Formate dehydrogenase, subunit FdhD (1)
Formate-tetrahydrofolate ligase, FTHFS (1)
Formiminotransferase (1)
Formiminotransferase, C-terminal (1)
Formiminotransferase, N-terminal (1)
Formyl transferase, C-terminal (1)
Formyl transferase, C-terminal-like (2)
Formyl transferase, N-terminal (2)
Formylmethionine deformylase (1)
Fumarate lyase (4)
Fumarate reductase, C-terminal (4)
Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal (2)
Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal (3)
Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal (3)
Fumarylacetoacetase (1)
Fumarylacetoacetase, C-terminal-like (2)
Fumarylacetoacetase, C-terminal-related (2)
Fumarylacetoacetase, N-terminal (1)

G
GAD (1)
GAF (15)
GCN5-related N-acetyltransferase (17)
GDP-mannose 4,6-dehydratase (1)
GGDEF (13)
GHMP kinase (3)
GHMP kinase, C-terminal (2)
GMP synthase, C-terminal (1)
GMP synthase, N-terminal (1)
GPCR, rhodopsin-like (5)
GPW/gp25 (2)
GTP cyclohydrolase I (2)
GTP cyclohydrolase II (1)
GTP-binding (3)
GTP-binding protein LepA (1)
GTP-binding protein LepA, C-terminal (1)
GTP-binding protein Obg/CgtA (1)
GTP-binding protein TypA (1)
GTP-binding protein, HSR1-related (7)
GTP-binding protein, HflX (1)
GTP-binding, EngA (1)
GTP1/OBG subdomain (1)
GTP1/OBG, conserved site (1)
GTPase EngC (1)
Galactose oxidase/kelch, beta-propeller (2)
Galactose-binding like (9)
Gamma-glutamyl phosphate reductase GPR (1)
Gamma-glutamyltranspeptidase (4)
GatB N-terminal region (1)
GatB, central region (1)
GatB/Yqey (2)
General secretion pathway protein G (1)
General secretory system II, protein E, N-terminal (1)
General substrate transporter (1)
Gid protein (1)
Globin (3)
Globin, subset (1)
Globin, truncated bacterial-like (1)
Globin-like (4)
Glu-tRNAGln amidotransferase, C subunit (1)
Glucokinase regulatory, conserved site (1)
Glucokinase regulatory-like protein (1)
Glucosamine-6-phosphate isomerase (1)
Glucosamine-fructose-6-phosphate aminotransferase, isomerising (1)
Glucosamine/galactosamine-6-phosphate isomerase (1)
Glucose sorbosone dehydrogenase (2)
Glucose-1-phosphate adenylyltransferase (1)
Glucose-inhibited division protein A (1)
Glucose-inhibited division protein A-related (2)
Glutamate 5-kinase (2)
Glutamate 5-kinase, ProB-related (1)
Glutamate 5-kinase, pro-B (1)
Glutamate dehydrogenase (1)
Glutamate synthase, alpha subunit, C-terminal (1)
Glutamate synthase, central-C (2)
Glutamate synthase, central-N (1)
Glutamate--cysteine ligase, GCS2 (1)
Glutamate-5-semialdehyde dehydrogenase (1)
Glutamate/phenylalanine/leucine/valine dehydrogenase (2)
Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (2)
Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal (1)
Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation region (2)
Glutamine amidotransferase class-I, C-terminal (5)
Glutamine amidotransferase of anthranilate synthase (1)
Glutamine amidotransferase type 1 (7)
Glutamine amidotransferase, class-II (4)
Glutamine amidotransferase, type II (4)
Glutamine cyclotransferase (1)
Glutamine synthetase type I (1)
Glutamine synthetase, beta-Grasp (1)
Glutamine synthetase, catalytic region (2)
Glutamine synthetase/guanido kinase, catalytic region (3)
Glutaminyl-tRNA synthetase, class Ic (1)
Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial (1)
Glutamyl-tRNA(Gln) amidotransferase A subunit (1)
Glutamyl-tRNA(Gln) amidotransferase B subunit (1)
Glutamyl/glutaminyl-tRNA synthetase, class Ic (3)
Glutathione S-transferase, C-terminal-like (1)
Glutathione peroxidase (1)
Glyceraldehyde 3-phosphate dehydrogenase (3)
Glyceraldehyde-3-phosphate dehydrogenase, type I (1)
Glycerol kinase (1)
Glycerophosphoryl diester phosphodiesterase (3)
Glycine cleavage H-protein (1)
Glycine cleavage H-protein, subgroup (1)
Glycine cleavage T-protein, C-terminal barrel (2)
Glycine cleavage T-protein, N-terminal (2)
Glycine cleavage system P-protein (1)
Glycine cleavage system T protein (1)
Glycine hydroxymethyltransferase (1)
Glycogen/starch synthases, ADP-glucose type (2)
Glycolate oxidase, iron-sulphur subunit (1)
Glycoside hydrolase, catalytic core (9)
Glycoside hydrolase, family 13, N-terminal (4)
Glycoside hydrolase, family 18, catalytic domain (2)
Glycoside hydrolase, family 20 (1)
Glycoside hydrolase, family 20, catalytic core (1)
Glycoside hydrolase, family 3, C-terminal (1)
Glycoside hydrolase, family 3, N-terminal (2)
Glycoside hydrolase, family 38, core (1)
Glycoside hydrolase, family 5 (1)
Glycoside hydrolase, family 57, core (1)
Glycoside hydrolase, family 6 (1)
Glycoside hydrolase, family 77 (1)
Glycoside hydrolase, family 9 (1)
Glycoside hydrolase, subgroup, catalytic core (5)
Glycoside hydrolase-type carbohydrate-binding (1)
Glycoside hydrolase/deacetylase, beta/alpha-barrel (6)
Glycosyl hydrolase, family 13, all-beta (1)
Glycosyl hydrolase, family 13, catalytic region (1)
Glycosyl hydrolase, family 13, subfamily, catalytic region (1)
Glycosyl transferase, family 19 (1)
Glycosyl transferase, family 2 (13)
Glycosyl transferase, family 25 (1)
Glycosyl transferase, family 28 (1)
Glycosyl transferase, family 28, C-terminal (1)
Glycosyl transferase, family 3 (3)
Glycosyl transferase, family 3, N-terminal (2)
Glycosyl transferase, family 35 (1)
Glycosyl transferase, family 39 (1)
Glycosyl transferase, family 4 (1)
Glycosyl transferase, family 51 (4)
Glycosyl transferase, family 9 (2)
Glycosyl transferase, group 1 (12)
Glycosyltransferase 36 (1)
Glycosyltransferase 36 associated (1)
Glycyl-tRNA synthetase, alpha2 dimer (1)
Glyoxalase/bleomycin resistance protein/dioxygenase (17)
GntR, C-terminal (1)
Gp5, C-terminal (1)
GroEL-like chaperone, ATPase (1)
GroES-like (11)
GrpE nucleotide exchange factor (1)
GrpE nucleotide exchange factor, coiled-coil (1)