open/close all
Genomic map| Metabolism |
| Carbohydrate Metabolism |
| Glycolysis / Gluconeogenesis |
| Pyruvate metabolism |
| Glyoxylate and dicarboxylate metabolism |
| Propanoate metabolism |
| Butanoate metabolism |
| Inositol metabolism |
| Inositol phosphate metabolism |
| Citrate cycle (TCA cycle) |
| Pentose phosphate pathway |
| Fructose and mannose metabolism |
| Galactose metabolism |
| Ascorbate and aldarate metabolism |
| Starch and sucrose metabolism |
| Aminosugars metabolism |
| Nucleotide sugars metabolism |
| Energy Metabolism |
| electron transport system |
| ATP synthesis |
| Sulfur metabolism |
| ferredoxin, thioredoxin, rubredoxin |
| Lipid Metabolism |
| Fatty acid biosynthesis (path 1) |
| Fatty acid biosynthesis (path 2) |
| Fatty acid metabolism |
| Synthesis and degradation of ketone bodies |
| Sterols biosynthesis |
| Glycerolipid metabolism |
| Phospholipid degradation |
| Nucleotide Metabolism |
| Purine metabolism |
| Pyrimidine metabolism |
| Amino Acid Metabolism |
| Glutamate metabolism & Nitrogen assimilation |
| Arginine and proline metabolism |
| Histidine metabolism |
| Tyrosine metabolism |
| Phenylalanine metabolism |
| Tryptophan metabolism |
| Phenylalanine, tyrosine and tryptophan biosynthesis |
| Urea cycle and metabolism of amino groups |
| Alanine and aspartate metabolism |
| Glycine, serine and threonine metabolism |
| Methionine metabolism |
| Cysteine metabolism |
| Valine, leucine and isoleucine degradation |
| Valine, leucine and isoleucine biosynthesis |
| Lysine biosynthesis |
| Lysine degradation |
| Metabolism of Cofactors and Vitamins |
| Thiamine metabolism |
| Riboflavin metabolism |
| Vitamin B6 metabolism |
| Nicotinate and nicotinamide metabolism |
| Pantothenate and CoA biosynthesis |
| Biotin metabolism |
| Folate biosynthesis |
| Porphyrin and chlorophyll metabolism |
| Ubiquinone biosynthesis |
| Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics |
| Degradation of aromatic compounds |
| Degradation of others |
| Others |
| Genetic Information Processing |
| Transcription |
| RNA polymerase |
| HTH family transcriptional regulators |
| sigma factor |
| Translation |
| Ribosome |
| Translation factors |
| Aminoacyl-tRNA biosynthesis |
| Replication and Repair |
| DNA polymerase |
| Replication complex |
| Others |
| Environmental Information and Cellular Processing |
| Membrane Transport |
| ABC transporter |
| transporters |
| Protein export |
| Phosphotransferase system (PTS) |
| Signal Transduction |
| Two-component system |
| Cellular Processes |
| Peptidoglycan biosynthesis |
| Cell wall/membrane/envelope biogenesis |
| Cell division |
| Cell Motility |
| Others |
| Unclassified |
| putative function (general) |
| uncharacterized protein |
| Transposon-related functions |
| hypothetical protein |
| hypothetical protein (prediction only) |
Clone information| NBRC No. | G09-001-047 |
|---|---|
| clone name | MDFO1S8503L22 |
| organism | Kocuria rhizophila DC2201 (= NBRC 103217) |
| replicon | chromosome |
| start position | 1,058,228 |
| stop position | 1,098,914 |
| vector | pCC1FOS |
| cloning site | Eco72 I |
| resistance | Chloramphenicol |
List of genes covered by this clone (39 CDSs, 0 tRNAs, 0 rRNAs)| ID | start | stop | direction | length(bp) | annotation |
|---|---|---|---|---|---|
| KRH_09710 | 1,059,631 | 1,058,663 | - | 969 | NAD-dependent epimerase/dehydratase family protein |
| KRH_09720 | 1,059,852 | 1,060,784 | + | 933 | galactofuranosyltransferase |
| KRH_09730 | 1,060,771 | 1,061,631 | + | 861 | putative glycosyltransferase |
| KRH_09740 | 1,061,661 | 1,063,682 | + | 2,022 | putative polysaccharide biosynthesis protein |
| KRH_09750 | 1,063,907 | 1,064,929 | + | 1,023 | putative undecaprenyl-phosphate glycosyltransferase |
| KRH_09760 | 1,064,926 | 1,065,408 | + | 483 | hypothetical membrane protein |
| KRH_09770 | 1,065,405 | 1,065,785 | + | 381 | hypothetical membrane protein |
| KRH_09780 | 1,065,816 | 1,066,607 | + | 792 | ATP synthase subunit a |
| KRH_09790 | 1,066,722 | 1,066,925 | + | 204 | ATP synthase subunit c |
| KRH_09800 | 1,066,986 | 1,067,522 | + | 537 | ATP synthase subunit b |
| KRH_09810 | 1,067,522 | 1,068,334 | + | 813 | ATP synthase delta chain |
| KRH_09820 | 1,068,506 | 1,070,131 | + | 1,626 | ATP synthase alpha chain |
| KRH_09830 | 1,070,189 | 1,071,100 | + | 912 | ATP synthase gamma chain |
| KRH_09840 | 1,071,143 | 1,072,609 | + | 1,467 | ATP synthase beta chain |
| KRH_09850 | 1,072,613 | 1,072,891 | + | 279 | ATP synthase epsilon chain |
| KRH_09860 | 1,073,037 | 1,074,320 | + | 1,284 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
| KRH_09870 | 1,074,671 | 1,074,468 | - | 204 | cold shock protein |
| KRH_09880 | 1,075,730 | 1,075,035 | - | 696 | hypothetical protein |
| KRH_09890 | 1,075,775 | 1,075,960 | + | 186 | hypothetical protein |
| KRH_09900 | 1,077,241 | 1,076,060 | - | 1,182 | hypothetical membrane protein |
| KRH_09910 | 1,077,509 | 1,078,402 | + | 894 | hypothetical protein |
| KRH_09920 | 1,078,488 | 1,079,465 | + | 978 | putative ABC transporter ATP-binding protein |
| KRH_09930 | 1,079,663 | 1,081,291 | + | 1,629 | hypothetical membrane protein |
| KRH_09940 | 1,081,324 | 1,081,668 | + | 345 | hypothetical protein |
| KRH_09950 | 1,082,040 | 1,083,881 | + | 1,842 | hypothetical protein |
| KRH_09960 | 1,084,599 | 1,083,982 | - | 618 | pyrazinamidase/nicotinamidase |
| KRH_09970 | 1,085,951 | 1,084,614 | - | 1,338 | putative nicotinate phosphoribosyltransferase |
| KRH_09980 | 1,086,017 | 1,086,367 | + | 351 | putative ATP-dependent Clp protease adaptor protein ClpS |
| KRH_09990 | 1,086,367 | 1,086,927 | + | 561 | hypothetical protein |
| KRH_10000 | 1,086,996 | 1,087,889 | + | 894 | glutamate racemase |
| KRH_10010 | 1,087,915 | 1,088,754 | + | 840 | hypothetical protein |
| KRH_10020 | 1,088,840 | 1,089,574 | + | 735 | ribonuclease PH |
| KRH_10030 | 1,089,564 | 1,090,241 | + | 678 | nucleoside-triphosphatase |
| KRH_10040 | 1,090,245 | 1,091,105 | + | 861 | hypothetical protein |
| KRH_10050 | 1,091,147 | 1,091,728 | + | 582 | putative DNA polymerase III epsilon subunit |
| KRH_10060 | 1,092,856 | 1,091,810 | - | 1,047 | hypothetical protein |
| KRH_10070 | 1,093,708 | 1,092,929 | - | 780 | hypothetical protein |
| KRH_10080 | 1,094,853 | 1,094,038 | - | 816 | hypothetical protein |
| KRH_10090 | 1,095,112 | 1,096,335 | + | 1,224 | nuclease SbcCD subunit D |
Distribution of Our Microbial Genomic DNA clones