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Genomic map| Metabolism |
| Carbohydrate Metabolism |
| Glycolysis / Gluconeogenesis |
| Pyruvate metabolism |
| Glyoxylate and dicarboxylate metabolism |
| Propanoate metabolism |
| Butanoate metabolism |
| Inositol metabolism |
| Inositol phosphate metabolism |
| Citrate cycle (TCA cycle) |
| Pentose phosphate pathway |
| Fructose and mannose metabolism |
| Galactose metabolism |
| Ascorbate and aldarate metabolism |
| Starch and sucrose metabolism |
| Aminosugars metabolism |
| Nucleotide sugars metabolism |
| Energy Metabolism |
| electron transport system |
| ATP synthesis |
| Sulfur metabolism |
| ferredoxin, thioredoxin, rubredoxin |
| Lipid Metabolism |
| Fatty acid biosynthesis (path 1) |
| Fatty acid biosynthesis (path 2) |
| Fatty acid metabolism |
| Synthesis and degradation of ketone bodies |
| Sterols biosynthesis |
| Glycerolipid metabolism |
| Phospholipid degradation |
| Nucleotide Metabolism |
| Purine metabolism |
| Pyrimidine metabolism |
| Amino Acid Metabolism |
| Glutamate metabolism & Nitrogen assimilation |
| Arginine and proline metabolism |
| Histidine metabolism |
| Tyrosine metabolism |
| Phenylalanine metabolism |
| Tryptophan metabolism |
| Phenylalanine, tyrosine and tryptophan biosynthesis |
| Urea cycle and metabolism of amino groups |
| Alanine and aspartate metabolism |
| Glycine, serine and threonine metabolism |
| Methionine metabolism |
| Cysteine metabolism |
| Valine, leucine and isoleucine degradation |
| Valine, leucine and isoleucine biosynthesis |
| Lysine biosynthesis |
| Lysine degradation |
| Metabolism of Cofactors and Vitamins |
| Thiamine metabolism |
| Riboflavin metabolism |
| Vitamin B6 metabolism |
| Nicotinate and nicotinamide metabolism |
| Pantothenate and CoA biosynthesis |
| Biotin metabolism |
| Folate biosynthesis |
| Porphyrin and chlorophyll metabolism |
| Ubiquinone biosynthesis |
| Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics |
| Degradation of aromatic compounds |
| Degradation of others |
| Others |
| Genetic Information Processing |
| Transcription |
| RNA polymerase |
| HTH family transcriptional regulators |
| sigma factor |
| Translation |
| Ribosome |
| Translation factors |
| Aminoacyl-tRNA biosynthesis |
| Replication and Repair |
| DNA polymerase |
| Replication complex |
| Others |
| Environmental Information and Cellular Processing |
| Membrane Transport |
| ABC transporter |
| transporters |
| Protein export |
| Phosphotransferase system (PTS) |
| Signal Transduction |
| Two-component system |
| Cellular Processes |
| Peptidoglycan biosynthesis |
| Cell wall/membrane/envelope biogenesis |
| Cell division |
| Cell Motility |
| Others |
| Unclassified |
| putative function (general) |
| uncharacterized protein |
| Transposon-related functions |
| hypothetical protein |
| hypothetical protein (prediction only) |
Clone information| NBRC No. | G09-001-089 |
|---|---|
| clone name | MDFO1S8501L09 |
| organism | Kocuria rhizophila DC2201 (= NBRC 103217) |
| replicon | chromosome |
| start position | 1,994,418 |
| stop position | 2,030,336 |
| vector | pCC1FOS |
| cloning site | Eco72 I |
| resistance | Chloramphenicol |
List of genes covered by this clone (32 CDSs, 1 tRNAs, 0 rRNAs)| ID | start | stop | direction | length(bp) | annotation |
|---|---|---|---|---|---|
| KRH_17570 | 1,994,932 | 1,995,726 | + | 795 | hypothetical protein |
| KRH_17580 | 1,995,878 | 1,996,522 | + | 645 | carbonic anhydrase |
| KRH_17590 | 1,996,732 | 1,998,138 | + | 1,407 | fumarate hydratase class II |
| KRH_17600 | 1,998,470 | 2,000,212 | + | 1,743 | pyruvate dehydrogenase |
| KRH_17610 | 2,000,760 | 2,000,293 | - | 468 | hypothetical protein |
| KRH_17620 | 2,001,329 | 2,000,790 | - | 540 | putative A24A family peptidase |
| KRH_17630 | 2,001,409 | 2,002,173 | + | 765 | hypothetical protein |
| KRH_17640 | 2,003,593 | 2,002,307 | - | 1,287 | putative PhoH-like protein |
| KRH_17650 | 2,004,771 | 2,004,010 | - | 762 | short-chain Z-isoprenyl diphosphate synthase |
| KRH_17660 | 2,004,910 | 2,005,623 | + | 714 | hypothetical membrane protein |
| KRH_17670 | 2,008,058 | 2,005,773 | - | 2,286 | hypothetical protein |
| KRH_17680 | 2,008,613 | 2,008,218 | - | 396 | hypothetical protein |
| KRH_17690 | 2,009,521 | 2,008,610 | - | 912 | mycothiol S-conjugate amidase Mca |
| KRH_17700 | 2,009,669 | 2,010,148 | + | 480 | hypothetical protein |
| KRH_17710 | 2,010,314 | 2,010,811 | + | 498 | transcription elongation factor GreA |
| KRH_17720 | 2,010,968 | 2,011,195 | + | 228 | hypothetical membrane protein |
| KRH_17730 | 2,012,462 | 2,011,215 | - | 1,248 | putative threonine dehydratase |
| KRH_17740 | 2,013,983 | 2,012,616 | - | 1,368 | hypothetical membrane protein |
| KRH_17750 | 2,014,049 | 2,014,660 | + | 612 | hypothetical protein |
| KRH_17760 | 2,015,694 | 2,014,897 | - | 798 | hypothetical membrane protein |
| KRH_17770 | 2,017,334 | 2,015,949 | - | 1,386 | putative NADH dehydrogenase |
| KRH_17780 | 2,018,761 | 2,017,406 | - | 1,356 | putative subtilisin family peptidase |
| KRH_17790 | 2,019,819 | 2,018,866 | - | 954 | Ppx/GppA phosphatase family protein |
| KRH_17800 | 2,020,429 | 2,019,884 | - | 546 | hypothetical protein |
| KRH_17810 | 2,020,995 | 2,020,426 | - | 570 | hypothetical protein |
| KRH_17820 | 2,022,426 | 2,021,143 | - | 1,284 | enolase |
| KRH_17830 | 2,023,626 | 2,022,532 | - | 1,095 | hypothetical protein |
| KRH_17840 | 2,024,765 | 2,023,623 | - | 1,143 | adenosine deaminase |
| KRH_17850 | 2,026,613 | 2,024,769 | - | 1,845 | hypothetical protein |
| KRH_17860 | 2,027,110 | 2,026,724 | - | 387 | cytidine deaminase |
| KRH_17870 | 2,028,313 | 2,027,204 | - | 1,110 | hypothetical protein |
| KRH_17880 | 2,029,551 | 2,028,310 | - | 1,242 | M20D family peptidase |
| ID | start | stop | direction | length(bp) | type |
|---|---|---|---|---|---|
| KRH_t00390 | 2,015,874 | 2,015,798 | - | 77 | tRNA-Leu |
Distribution of Our Microbial Genomic DNA clones