Clone Information : G09-002-017 / MDFO1S8503H18
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| Metabolism |
| Carbohydrate Metabolism |
| Glycolysis / Gluconeogenesis |
| Pyruvate metabolism |
| Glyoxylate and dicarboxylate metabolism |
| Propanoate metabolism |
| Butanoate metabolism |
| Inositol metabolism |
| Inositol phosphate metabolism |
| Citrate cycle (TCA cycle) |
| Pentose phosphate pathway |
| Fructose and mannose metabolism |
| Galactose metabolism |
| Ascorbate and aldarate metabolism |
| Starch and sucrose metabolism |
| Aminosugars metabolism |
| Nucleotide sugars metabolism |
| Energy Metabolism |
| electron transport system |
| ATP synthesis |
| Sulfur metabolism |
| ferredoxin, thioredoxin, rubredoxin |
| Lipid Metabolism |
| Fatty acid biosynthesis (path 1) |
| Fatty acid biosynthesis (path 2) |
| Fatty acid metabolism |
| Synthesis and degradation of ketone bodies |
| Sterols biosynthesis |
| Glycerolipid metabolism |
| Phospholipid degradation |
| Nucleotide Metabolism |
| Purine metabolism |
| Pyrimidine metabolism |
| Amino Acid Metabolism |
| Glutamate metabolism & Nitrogen assimilation |
| Arginine and proline metabolism |
| Histidine metabolism |
| Tyrosine metabolism |
| Phenylalanine metabolism |
| Tryptophan metabolism |
| Phenylalanine, tyrosine and tryptophan biosynthesis |
| Urea cycle and metabolism of amino groups |
| Alanine and aspartate metabolism |
| Glycine, serine and threonine metabolism |
| Methionine metabolism |
| Cysteine metabolism |
| Valine, leucine and isoleucine degradation |
| Valine, leucine and isoleucine biosynthesis |
| Lysine biosynthesis |
| Lysine degradation |
| Metabolism of Cofactors and Vitamins |
| Thiamine metabolism |
| Riboflavin metabolism |
| Vitamin B6 metabolism |
| Nicotinate and nicotinamide metabolism |
| Pantothenate and CoA biosynthesis |
| Biotin metabolism |
| Folate biosynthesis |
| Porphyrin and chlorophyll metabolism |
| Ubiquinone biosynthesis |
| Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics |
| Degradation of aromatic compounds |
| Degradation of others |
| Others |
| Genetic Information Processing |
| Transcription |
| RNA polymerase |
| HTH family transcriptional regulators |
| sigma factor |
| Translation |
| Ribosome |
| Translation factors |
| Aminoacyl-tRNA biosynthesis |
| Replication and Repair |
| DNA polymerase |
| Replication complex |
| Others |
| Environmental Information and Cellular Processing |
| Membrane Transport |
| ABC transporter |
| transporters |
| Protein export |
| Phosphotransferase system (PTS) |
| Signal Transduction |
| Two-component system |
| Cellular Processes |
| Peptidoglycan biosynthesis |
| Cell wall/membrane/envelope biogenesis |
| Cell division |
| Cell Motility |
| Others |
| Unclassified |
| putative function (general) |
| uncharacterized protein |
| Transposon-related functions |
| hypothetical protein |
| hypothetical protein (prediction only) |
Clone information
| NBRC No. | G09-002-017 |
|---|---|
| clone name | MDFO1S8503H18 |
| organism | Kocuria rhizophila DC2201 (= NBRC 103217) |
| replicon | chromosome |
| start position | 590,323 |
| stop position | 628,877 |
| vector | pCC1FOS |
| cloning site | Eco72 I |
| resistance | Chloramphenicol |
List of genes covered by this clone (33 CDSs, 3 tRNAs, 0 rRNAs)
CDS
| ID | start | stop | direction | length(bp) | annotation |
|---|---|---|---|---|---|
| KRH_05390 | 590,527 | 592,530 | + | 2,004 | putative menaquinone biosynthesis protein MenD |
| KRH_05400 | 592,756 | 593,493 | + | 738 | putative oxidoreductase |
| KRH_05410 | 594,273 | 593,503 | - | 771 | putative amino acid ABC transporter amino acid-binding protein |
| KRH_05420 | 595,928 | 594,348 | - | 1,581 | isochorismate synthase |
| KRH_05430 | 596,084 | 597,355 | + | 1,272 | putative oxidoreductase |
| KRH_05440 | 597,408 | 598,427 | + | 1,020 | putative polyprenyl diphosphate synthase |
| KRH_05450 | 598,510 | 600,291 | + | 1,782 | NSS family transporter |
| KRH_05460 | 600,288 | 600,584 | + | 297 | hypothetical protein |
| KRH_05470 | 601,616 | 600,678 | - | 939 | hypothetical membrane protein |
| KRH_05480 | 603,147 | 601,666 | - | 1,482 | hypothetical protein |
| KRH_05490 | 603,370 | 604,833 | + | 1,464 | hypothetical protein |
| KRH_05500 | 606,643 | 605,120 | - | 1,524 | catalase |
| KRH_05510 | 607,163 | 606,636 | - | 528 | putative Fur family transcriptional regulator |
| KRH_05520 | 607,885 | 609,624 | + | 1,740 | putative RNA polymerase ECF-type sigma factor |
| KRH_05530 | 609,683 | 610,588 | + | 906 | putative protease HtpX |
| KRH_05540 | 611,292 | 610,801 | - | 492 | hypothetical protein |
| KRH_05550 | 612,253 | 611,342 | - | 912 | hypothetical protein |
| KRH_05560 | 612,803 | 613,204 | + | 402 | thioredoxin |
| KRH_05570 | 614,143 | 613,445 | - | 699 | hypothetical membrane protein |
| KRH_05580 | 615,249 | 614,254 | - | 996 | hypothetical protein |
| KRH_05590 | 615,473 | 617,227 | + | 1,755 | hypothetical membrane protein |
| KRH_05600 | 617,363 | 619,522 | + | 2,160 | ATP-dependent DEAD-box RNA helicase DeaD |
| KRH_05610 | 620,295 | 620,744 | + | 450 | beta-hydroxyacyl-[acyl-carrier-protein] dehydratase subunit HadA |
| KRH_05620 | 620,741 | 621,223 | + | 483 | beta-hydroxyacyl-[acyl-carrier-protein] dehydratase subunit HadB |
| KRH_05630 | 621,235 | 622,500 | + | 1,266 | UDP-N-acetylenolpyruvoylglucosamine reductase |
| KRH_05640 | 622,553 | 622,960 | + | 408 | hypothetical protein |
| KRH_05650 | 624,182 | 623,046 | - | 1,137 | aspartate-semialdehyde dehydrogenase |
| KRH_05660 | 624,331 | 624,179 | - | 153 | hypothetical protein |
| KRH_05670 | 624,795 | 624,418 | - | 378 | hypothetical protein |
| KRH_05680 | 625,351 | 624,800 | - | 552 | dihydrofolate reductase |
| KRH_05690 | 626,286 | 625,465 | - | 822 | thymidylate synthase |
| KRH_05700 | 627,315 | 626,365 | - | 951 | putative NTP pyrophosphohydrolase MutT |
| KRH_05710 | 628,305 | 627,394 | - | 912 | acetyltransferase MshD |
tRNA
| ID | start | stop | direction | length(bp) | type |
|---|---|---|---|---|---|
| KRH_t00110 | 612,499 | 612,583 | + | 85 | tRNA-Tyr |
| KRH_t00120 | 619,919 | 619,990 | + | 72 | tRNA-Thr |
| KRH_t00130 | 620,044 | 620,117 | + | 74 | tRNA-Met |
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.
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