Clone Information : G12-001-169 / REGR1S7018G07
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| Metabolism |
| Carbohydrate Metabolism |
| Glycolysis / Gluconeogenesis |
| Pyruvate metabolism |
| Glyoxylate and dicarboxylate metabolism |
| Propanoate metabolism |
| Butanoate metabolism |
| Inositol metabolism |
| Inositol phosphate metabolism |
| Citrate cycle (TCA cycle) |
| Pentose phosphate pathway |
| Fructose and mannose metabolism |
| Galactose metabolism |
| Ascorbate and aldarate metabolism |
| Starch and sucrose metabolism |
| Aminosugars metabolism |
| Nucleotide sugars metabolism |
| Energy Metabolism |
| electron transport system |
| ATP synthesis |
| Sulfur metabolism |
| ferredoxin, thioredoxin, rubredoxin |
| Lipid Metabolism |
| Fatty acid biosynthesis (path 1) |
| Fatty acid biosynthesis (path 2) |
| Fatty acid metabolism |
| Synthesis and degradation of ketone bodies |
| Sterols biosynthesis |
| Glycerolipid metabolism |
| Phospholipid degradation |
| Nucleotide Metabolism |
| Purine metabolism |
| Pyrimidine metabolism |
| Amino Acid Metabolism |
| Glutamate metabolism & Nitrogen assimilation |
| Arginine and proline metabolism |
| Histidine metabolism |
| Tyrosine metabolism |
| Phenylalanine metabolism |
| Tryptophan metabolism |
| Phenylalanine, tyrosine and tryptophan biosynthesis |
| Urea cycle and metabolism of amino groups |
| Alanine and aspartate metabolism |
| Glycine, serine and threonine metabolism |
| Methionine metabolism |
| Cysteine metabolism |
| Valine, leucine and isoleucine degradation |
| Valine, leucine and isoleucine biosynthesis |
| Lysine biosynthesis |
| Lysine degradation |
| Metabolism of Cofactors and Vitamins |
| Thiamine metabolism |
| Riboflavin metabolism |
| Vitamin B6 metabolism |
| Nicotinate and nicotinamide metabolism |
| Pantothenate and CoA biosynthesis |
| Biotin metabolism |
| Folate biosynthesis |
| Porphyrin and chlorophyll metabolism |
| Ubiquinone biosynthesis |
| Biosynthesis of Secondary Metabolites and Biodegradation of Xenobiotics |
| Degradation of aromatic compounds |
| Degradation of others |
| Others |
| Genetic Information Processing |
| Transcription |
| RNA polymerase |
| HTH family transcriptional regulators |
| sigma factor |
| Translation |
| Ribosome |
| Translation factors |
| Aminoacyl-tRNA biosynthesis |
| Replication and Repair |
| DNA polymerase |
| Replication complex |
| Others |
| Environmental Information and Cellular Processing |
| Membrane Transport |
| ABC transporter |
| transporters |
| Protein export |
| Phosphotransferase system (PTS) |
| Signal Transduction |
| Two-component system |
| Cellular Processes |
| Peptidoglycan biosynthesis |
| Cell wall/membrane/envelope biogenesis |
| Cell division |
| Others |
| Unclassified |
| putative function (general) |
| uncharacterized protein |
| Transposon-related functions |
| hypothetical protein |
| hypothetical protein (prediction only) |
Clone information
| NBRC No. | G12-001-169 |
|---|---|
| clone name | REGR1S7018G07 |
| organism | Rhodococcus erythropolis PR4 (= NBRC 100887) |
| replicon | chromosome |
| start position | 4,274,552 |
| stop position | 4,317,871 |
| vector | SuperCos 1 |
| cloning site | BamH I |
| resistance | Ampicilin |
List of genes covered by this clone (33 CDSs, 1 tRNAs, 3 rRNAs)
CDS
| ID | start | stop | direction | length(bp) | annotation |
|---|---|---|---|---|---|
| RER_39000 | 4,274,988 | 4,275,626 | + | 639 | conserved hypothetical protein |
| RER_39010 | 4,282,952 | 4,281,693 | - | 1,260 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
| RER_39020 | 4,283,007 | 4,283,579 | + | 573 | probable PduO-type ATP--cob(I)alamin adenosyltransferase |
| RER_39030 | 4,284,024 | 4,283,590 | - | 435 | conserved hypothetical protein |
| RER_39040 | 4,284,430 | 4,284,062 | - | 369 | ATP synthase epsilon chain |
| RER_39050 | 4,285,888 | 4,284,437 | - | 1,452 | ATP synthase beta chain |
| RER_39060 | 4,286,875 | 4,285,892 | - | 984 | ATP synthase gamma chain |
| RER_39070 | 4,288,567 | 4,286,924 | - | 1,644 | ATP synthase alpha chain |
| RER_39080 | 4,289,463 | 4,288,630 | - | 834 | ATP synthase delta chain |
| RER_39090 | 4,290,017 | 4,289,460 | - | 558 | ATP synthase subunit b |
| RER_39100 | 4,290,267 | 4,290,025 | - | 243 | ATP synthase subunit c |
| RER_39110 | 4,291,178 | 4,290,351 | - | 828 | ATP synthase subunit a |
| RER_39120 | 4,291,929 | 4,291,459 | - | 471 | conserved hypothetical membrane protein |
| RER_39130 | 4,293,092 | 4,291,962 | - | 1,131 | probable UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosamine-1-phosphate transferase |
| RER_39140 | 4,294,471 | 4,293,146 | - | 1,326 | serine hydroxymethyltransferase |
| RER_39150 | 4,295,136 | 4,294,474 | - | 663 | conserved hypothetical protein |
| RER_39160 | 4,296,065 | 4,295,133 | - | 933 | protein methyltransferase |
| RER_39170 | 4,297,222 | 4,296,143 | - | 1,080 | peptide chain release factor 1 |
| RER_39180 | 4,297,605 | 4,297,369 | - | 237 | 50S ribosomal protein L31 |
| RER_39190 | 4,299,969 | 4,297,831 | - | 2,139 | transcription termination factor Rho |
| RER_39200 | 4,301,417 | 4,300,473 | - | 945 | homoserine kinase |
| RER_39210 | 4,302,544 | 4,301,462 | - | 1,083 | threonine synthase |
| RER_39220 | 4,303,854 | 4,302,541 | - | 1,314 | homoserine dehydrogenase |
| RER_39230 | 4,305,272 | 4,303,851 | - | 1,422 | diaminopimelate decarboxylase |
| RER_39240 | 4,306,921 | 4,305,269 | - | 1,653 | arginyl-tRNA synthetase |
| RER_39250 | 4,307,138 | 4,307,965 | + | 828 | hypothetical protein |
| RER_39260 | 4,307,970 | 4,308,689 | + | 720 | hypothetical protein |
| RER_39270 | 4,311,097 | 4,308,728 | - | 2,370 | xylulose-5-phosphate/fructose-6-phosphate phosphoketolase |
| RER_39280 | 4,311,506 | 4,312,432 | + | 927 | putative LysR family transcriptional regulator |
| RER_39290 | 4,312,561 | 4,313,889 | + | 1,329 | putative MFS transporter |
| RER_39300 | 4,313,892 | 4,315,754 | + | 1,863 | putative monooxygenase |
| RER_39310 | 4,317,357 | 4,315,828 | - | 1,530 | putative drug resistance efflux protein |
| RER_39320 | 4,317,443 | 4,317,820 | + | 378 | putative MarR family transcriptional regulator |
tRNA
| ID | start | stop | direction | length(bp) | type |
|---|---|---|---|---|---|
| RER_t0430 | 4,311,341 | 4,311,416 | + | 76 | tRNA-Arg |
rRNA
| ID | start | stop | direction | length(bp) | type |
|---|---|---|---|---|---|
| RER_r0100 | 4,275,935 | 4,275,816 | - | 120 | 5S rRNA |
| RER_r0110 | 4,279,220 | 4,276,085 | - | 3,136 | 23S rRNA |
| RER_r0120 | 4,281,076 | 4,279,557 | - | 1,520 | 16S rRNA |
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.
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