Please make javascript effective. Clone Information : G17-001-099 / DD1FE11L00014C03
Genomic map
Information storage and processing [J] Translation, ribosomal structure and biogenesis [A] RNA processing and modification [K] Transcription [L] Replication, recombination and repair Cellular processes and signaling [D] Cell cycle control, cell division, chromosome partitioning [V] Defense mechanisms [T] Signal transduction mechanisms [M] Cell wall/membrane/envelope biogenesis [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport [O] Posttranslational modification, protein turnover, chaperones Metabolism [C] Energy production and conversion [G] Carbohydrate transport and metabolism [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism [P] Inorganic ion transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism Poorly characterized [R] General function prediction only [S] Function unknown Unannotated
Clone information
NBRC No.
G17-001-099
clone name
DD1FE11L00014C03
organism
Deferribacter desulfuricans SSM1T (= NBRC 101012T )
replicon
Chromosome
start position
2,225,370
stop position
23,008
vector
pCC1FOS
cloning site
Eco72 I
resistance
Chloramphenicol
List of genes covered by this clone (23 CDSs, 0 tRNAs, 0 rRNAs)
CDS
ID
start
stop
direction
length(bp)
annotation
DEFDS_2176 2,225,569
2,227,320
+
1,752
hypothetical protein
DEFDS_2177 2,227,313
2,228,290
+
978
conserved hypothetical protein
DEFDS_2178 2,229,019
2,228,264
-
756
sulfate/molybdate ABC transporter, permease
DEFDS_2179 2,229,998
2,229,009
-
990
sulfate/molybdate ABC transporter, ATP-binding protein
DEFDS_2180 2,230,964
2,230,002
-
963
sulfate/molybdate ABC transporter, substrate-binding protein
DEFDS_2181 2,232,306
2,230,975
-
1,332
chromosome replication initiator protein DnaA
DEFDS_2182 2,233,498
2,232,299
-
1,200
threonine dehydratase
DEFDS_2183 2,233,558
2,234,307
+
750
3-oxoacyl-[acyl-carrier-protein] reductase
DEFDS_0001 135
1,244
+
1,110
DNA polymerase III, beta subunit
DEFDS_0002 1,244
2,245
+
1,002
conserved hypothetical protein
DEFDS_0003 2,242
4,611
+
2,370
DNA gyrase, B subunit
DEFDS_0004 4,621
7,029
+
2,409
DNA gyrase, A subunit
DEFDS_0005 7,031
7,885
+
855
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
DEFDS_0006 7,892
9,220
+
1,329
tRNA modification GTPase TrmE
DEFDS_0007 9,248
11,119
+
1,872
glucose inhibited division protein A
DEFDS_0008 11,094
11,708
+
615
glucose inhibited division protein B
DEFDS_0009 11,647
13,104
+
1,458
hypothetical protein
DEFDS_0010 13,232
13,918
+
687
metal dependent hydrolase
DEFDS_0011 13,908
14,957
+
1,050
conserved hypothetical protein
DEFDS_0012 14,944
16,095
+
1,152
hypothetical protein
DEFDS_0013 16,092
17,624
+
1,533
conserved hypothetical protein
DEFDS_0014 17,608
20,430
+
2,823
excinuclease ABC, A subunit
DEFDS_0015 20,417
22,054
+
1,638
N-acetylmuramoyl-L-alanine amidase
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at
http://www.nbrc.nite.go.jp/e/mdna-e.html .
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List of genes covered by this clone (23 CDSs, 0 tRNAs, 0 rRNAs)