Please make javascript effective. Clone Information : G18-001-001 / SP1FE13L00045B07
Genomic map
Cell envelope and cellular processes cell wall / transformation & competence transport / binding protein & lipoprotein sensor membrane bioenergetics mobility and chemotaxis secretion cell division sporulation Intermedialy metabolism metabolism of carbohydrates and related molecules specific pathways main glycolytic pathways TCA cycle metabolism of amino acids and related molecules metabolism of nucleotides and nucleic acids metabolism of lipids metabolism of coenzymes metabolism of phosphate metabolism of sulfur Information pathways DNA replication DNA modification & repair DNA recombination DNA packaging & segregation RNA synthesis RNA initiation regulation RNA elongation termination RNA modification protein synthesis ribosomal proteins aminoacyl-tRNA transferases initiation elongation termination protein modification protein folding Other functions adaptation of atypical condition detoxification antibiotic production phage related transposon miscellaneous similar to unknown proteins no similarity
Clone information
NBRC No.
G18-001-001
clone name
SP1FE13L00045B07
organism
Sphingobium japonicum UT26S (= NBRC 101211 )
replicon
chromosome1
start position
799
stop position
36,680
vector
pCC1FOS
cloning site
Eco72 I
resistance
Chloramphenicol
List of genes covered by this clone (34 CDSs, 0 tRNAs, 0 rRNAs)
CDS
ID
start
stop
direction
length(bp)
annotation
SJA_C1-00020 980
1,573
+
594
Maf-like protein
SJA_C1-00030 1,570
2,391
+
822
shikimate 5-dehydrogenase
SJA_C1-00040 2,411
3,004
+
594
dephospho-CoA kinase
SJA_C1-00050 3,036
3,728
+
693
DNA polymerase III epsilon subunit
SJA_C1-00060 3,824
4,420
+
597
sigma 54
SJA_C1-00070 4,466
5,008
+
543
PTS system nitrogen regulatory IIA component
SJA_C1-00080 4,968
5,477
+
510
conserved hypothetical protein
SJA_C1-00090 5,506
5,817
+
312
conserved hypothetical protein
SJA_C1-00100 5,995
6,642
+
648
N-acetylmuramoyl-L-alanine amidase
SJA_C1-00110 6,743
7,237
+
495
conserved hypothetical protein
SJA_C1-00120 7,836
7,273
-
564
thiamine monophosphate synthase
SJA_C1-00130 7,854
8,600
+
747
conserved hypothetical protein
SJA_C1-00140 11,343
8,578
-
2,766
TonB-dependent receptor-like protein
SJA_C1-00150 12,193
11,534
-
660
putative ICC-like phosphoesterase
SJA_C1-00160 12,247
13,095
+
849
putative sulfurtransferase
SJA_C1-00170 15,993
13,582
-
2,412
Lhr-like helicase
SJA_C1-00180 16,264
17,601
+
1,338
cystathionine beta-lyase/cystathionine gamma-synthase
SJA_C1-00190 17,598
18,527
+
930
putative dehydrogenase
SJA_C1-00200 19,268
18,594
-
675
phosphoserine phosphatase
SJA_C1-00210 19,347
20,477
+
1,131
ABC-type transport system permease component LinK
SJA_C1-00220 20,477
21,325
+
849
ABC-type transport system ATPase component LinL
SJA_C1-00230 21,329
22,291
+
963
ABC-type transport system periplasmic component LinM
SJA_C1-00240 22,299
22,907
+
609
ABC-type transport system auxiliary component (lipoprotein)
SJA_C1-00250 25,620
23,023
-
2,598
aminopeptidase N
SJA_C1-00260 26,673
25,771
-
903
ParB-like protein
SJA_C1-00270 27,470
26,688
-
783
chromosome partitioning protein ParA
SJA_C1-00280 28,108
27,467
-
642
putative S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division
SJA_C1-00290 29,955
28,105
-
1,851
NAD/FAD-utilizing enzyme apparently involved in cell division
SJA_C1-00300 31,297
30,014
-
1,284
tRNA modification GTPase
SJA_C1-00310 31,579
31,319
-
261
hypothetical protein
SJA_C1-00320 31,738
32,436
+
699
carboxymethylenebutenolidase
SJA_C1-00330 32,451
33,419
+
969
NADPH2:quinone reductase
SJA_C1-00340 33,543
34,562
+
1,020
hypothetical protein
SJA_C1-00350 35,510
34,791
-
720
tellurite resistance protein TerC
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at
http://www.nbrc.nite.go.jp/e/mdna-e.html .
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List of genes covered by this clone (34 CDSs, 0 tRNAs, 0 rRNAs)