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Clone Information : G18-001-045 / SP1FE13L00029A12
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Genomic map
Cell envelope and cellular processes cell wall / transformation & competence transport / binding protein & lipoprotein sensor membrane bioenergetics mobility and chemotaxis secretion cell division sporulation Intermedialy metabolism metabolism of carbohydrates and related molecules specific pathways main glycolytic pathways TCA cycle metabolism of amino acids and related molecules metabolism of nucleotides and nucleic acids metabolism of lipids metabolism of coenzymes metabolism of phosphate metabolism of sulfur Information pathways DNA replication DNA modification & repair DNA recombination DNA packaging & segregation RNA synthesis RNA initiation regulation RNA elongation termination RNA modification protein synthesis ribosomal proteins aminoacyl-tRNA transferases initiation elongation termination protein modification protein folding Other functions adaptation of atypical condition detoxification antibiotic production phage related transposon miscellaneous similar to unknown proteins no similarity
Clone information
NBRC No.
G18-001-045
clone name
SP1FE13L00029A12
organism
Sphingobium japonicum UT26S (= NBRC 101211 )
replicon
chromosome1
start position
984,090
stop position
1,020,178
vector
pCC1FOS
cloning site
Eco72 I
resistance
Chloramphenicol
List of genes covered by this clone (38 CDSs, 1 tRNAs, 0 rRNAs)
CDS
ID
start
stop
direction
length(bp)
annotation
SJA_C1-09770
984,222
984,527
+
306
hypothetical protein
SJA_C1-09780
984,739
985,020
+
282
hypothetical protein
SJA_C1-09790
985,008
985,385
+
378
putative nuclease
SJA_C1-09800
985,361
985,486
+
126
hypothetical protein
SJA_C1-09810
985,773
986,687
+
915
Abi-like protein
SJA_C1-09820
986,720
987,019
+
300
putative plasmid maintenance system antidote protein
SJA_C1-09830
987,024
987,500
+
477
hypothetical protein
SJA_C1-09840
988,064
987,513
-
552
putative transposase
SJA_C1-09850
988,455
988,033
-
423
putative transposase
SJA_C1-09860
988,930
988,592
-
339
hypothetical protein
SJA_C1-09870
990,106
988,934
-
1,173
putative integrase
SJA_C1-09880
990,758
990,099
-
660
hypothetical protein
SJA_C1-09890
990,864
991,055
+
192
hypothetical protein
SJA_C1-09900
991,048
991,254
+
207
hypothetical protein
SJA_C1-09910
991,537
991,334
-
204
hypothetical protein
SJA_C1-09920
991,666
992,223
+
558
hypothetical protein
SJA_C1-09930
992,210
993,226
+
1,017
hypothetical protein
SJA_C1-09940
993,416
993,234
-
183
hypothetical protein
SJA_C1-09950
993,698
994,399
+
702
putative phage-related protein
SJA_C1-09960
994,586
996,034
+
1,449
putative phage DNA primase/helicase
SJA_C1-09970
996,068
996,394
+
327
hypothetical protein
SJA_C1-09980
996,417
997,007
+
591
membrane protein involved in colicin uptake
SJA_C1-09990
997,018
997,704
+
687
hypothetical protein
SJA_C1-10000
997,853
998,131
+
279
hypothetical protein
SJA_C1-10010
998,784
998,137
-
648
hypothetical protein
SJA_C1-10020
998,830
999,027
+
198
conserved hypothetical protein
SJA_C1-10030
1,002,301
999,254
-
3,048
phage-related protein
SJA_C1-10040
1,003,041
1,002,304
-
738
hypothetical protein
SJA_C1-10050
1,005,095
1,003,125
-
1,971
putative GTPase/ATPase
SJA_C1-10060
1,005,653
1,006,621
+
969
hypothetical protein
SJA_C1-10070
1,006,651
1,007,904
+
1,254
hypothetical protein
SJA_C1-10080
1,008,122
1,008,280
+
159
hypothetical protein
SJA_C1-10090
1,008,485
1,008,294
-
192
YcfA-like protein
SJA_C1-10100
1,008,751
1,008,488
-
264
hypothetical protein
SJA_C1-10110
1,009,214
1,008,978
-
237
hypothetical protein
SJA_C1-10120
1,009,379
1,009,723
+
345
hypothetical protein
SJA_C1-10130
1,014,459
1,010,203
-
4,257
DNA-directed RNA polymerase subunit beta'
SJA_C1-10140
1,018,776
1,014,613
-
4,164
DNA-directed RNA polymerase subunit beta
tRNA
ID
start
stop
direction
length(bp)
type
SJA_C1-t0130
1,009,969
1,009,894
-
76
tRNA-Gln
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at
http://www.nbrc.nite.go.jp/e/mdna-e.html .