Clone Information : G18-001-121 / SP1FE13L00050C07
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| Cell envelope and cellular processes |
| cell wall / transformation & competence |
| transport / binding protein & lipoprotein |
| sensor |
| membrane bioenergetics |
| mobility and chemotaxis |
| secretion |
| cell division |
| sporulation |
| Intermedialy metabolism |
| metabolism of carbohydrates and related molecules |
| specific pathways |
| main glycolytic pathways |
| TCA cycle |
| metabolism of amino acids and related molecules |
| metabolism of nucleotides and nucleic acids |
| metabolism of lipids |
| metabolism of coenzymes |
| metabolism of phosphate |
| metabolism of sulfur |
| Information pathways |
| DNA replication |
| DNA modification & repair |
| DNA recombination |
| DNA packaging & segregation |
| RNA synthesis |
| RNA initiation |
| regulation |
| RNA elongation |
| termination |
| RNA modification |
| protein synthesis |
| ribosomal proteins |
| aminoacyl-tRNA transferases |
| initiation |
| elongation |
| termination |
| protein modification |
| protein folding |
| Other functions |
| adaptation of atypical condition |
| detoxification |
| antibiotic production |
| phage related |
| transposon |
| miscellaneous |
| similar to unknown proteins |
| no similarity |
Clone information
| NBRC No. | G18-001-121 |
|---|---|
| clone name | SP1FE13L00050C07 |
| organism | Sphingobium japonicum UT26S (= NBRC 101211) |
| replicon | chromosome1 |
| start position | 2,739,384 |
| stop position | 2,776,343 |
| vector | pCC1FOS |
| cloning site | Eco72 I |
| resistance | Chloramphenicol |
List of genes covered by this clone (42 CDSs, 0 tRNAs, 0 rRNAs)
CDS
| ID | start | stop | direction | length(bp) | annotation |
|---|---|---|---|---|---|
| SJA_C1-27330 | 2,740,746 | 2,741,042 | + | 297 | putative RNA-binding protein S4 |
| SJA_C1-27340 | 2,741,245 | 2,741,583 | + | 339 | ferredoxin |
| SJA_C1-27350 | 2,741,863 | 2,742,390 | + | 528 | CarD-family transcriptional regulator |
| SJA_C1-27360 | 2,742,881 | 2,742,504 | - | 378 | hypothetical protein |
| SJA_C1-27370 | 2,743,152 | 2,742,904 | - | 249 | hypothetical protein |
| SJA_C1-27380 | 2,743,690 | 2,743,223 | - | 468 | hypothetical protein |
| SJA_C1-27390 | 2,743,819 | 2,744,457 | + | 639 | TetR-family transcriptional regulator |
| SJA_C1-27400 | 2,744,781 | 2,745,344 | + | 564 | peroxiredoxin |
| SJA_C1-27410 | 2,745,592 | 2,747,172 | + | 1,581 | alkyl hydroperoxide reductase subunit F |
| SJA_C1-27420 | 2,748,022 | 2,747,414 | - | 609 | conserved hypothetical protein |
| SJA_C1-27430 | 2,748,701 | 2,748,102 | - | 600 | ribonuclease HII |
| SJA_C1-27440 | 2,749,467 | 2,748,694 | - | 774 | putative kinase |
| SJA_C1-27450 | 2,749,688 | 2,749,464 | - | 225 | conserved hypothetical protein |
| SJA_C1-27460 | 2,751,028 | 2,749,688 | - | 1,341 | phosphoglucosamine mutase |
| SJA_C1-27470 | 2,751,118 | 2,752,491 | + | 1,374 | putative Na+/alanine symporter |
| SJA_C1-27480 | 2,752,599 | 2,752,751 | + | 153 | hypothetical protein |
| SJA_C1-27490 | 2,753,062 | 2,754,462 | + | 1,401 | amino acid transporter |
| SJA_C1-27500 | 2,754,503 | 2,755,303 | + | 801 | diaminopimelate epimerase |
| SJA_C1-27510 | 2,755,305 | 2,756,633 | + | 1,329 | MiaB-like enzyme |
| SJA_C1-27520 | 2,756,741 | 2,757,673 | + | 933 | signal recognition particle GTPase |
| SJA_C1-27530 | 2,757,778 | 2,758,443 | + | 666 | intracellular septation protein A |
| SJA_C1-27540 | 2,759,035 | 2,758,478 | - | 558 | conserved hypothetical protein |
| SJA_C1-27550 | 2,759,249 | 2,759,863 | + | 615 | superoxide dismutase |
| SJA_C1-27560 | 2,759,987 | 2,760,424 | + | 438 | hypothetical protein |
| SJA_C1-27570 | 2,760,765 | 2,760,427 | - | 339 | hypothetical protein |
| SJA_C1-27580 | 2,761,286 | 2,760,738 | - | 549 | DnaJ-like protein |
| SJA_C1-27590 | 2,761,884 | 2,761,549 | - | 336 | hypothetical protein |
| SJA_C1-27600 | 2,761,816 | 2,764,149 | + | 2,334 | patatin |
| SJA_C1-27610 | 2,764,146 | 2,764,754 | + | 609 | hypothetical protein |
| SJA_C1-27620 | 2,765,046 | 2,764,759 | - | 288 | pterin-4-alpha-carbinolamine dehydratase |
| SJA_C1-27630 | 2,765,133 | 2,765,558 | + | 426 | conserved hypothetical protein |
| SJA_C1-27640 | 2,765,555 | 2,766,163 | + | 609 | heme exporter ATP-binding protein CcmA |
| SJA_C1-27650 | 2,766,160 | 2,766,807 | + | 648 | heme exporter membrane protein CcmB |
| SJA_C1-27660 | 2,767,071 | 2,767,967 | + | 897 | putative permease |
| SJA_C1-27670 | 2,768,259 | 2,767,978 | - | 282 | chorismate mutase |
| SJA_C1-27680 | 2,768,403 | 2,769,443 | + | 1,041 | octaprenyl-diphosphate synthase |
| SJA_C1-27690 | 2,769,568 | 2,770,347 | + | 780 | putative permease |
| SJA_C1-27700 | 2,770,368 | 2,772,845 | + | 2,478 | ATP-dependent helicase HrpB |
| SJA_C1-27710 | 2,772,904 | 2,773,182 | + | 279 | putative oxidoreductase |
| SJA_C1-27720 | 2,773,881 | 2,773,327 | - | 555 | conserved hypothetical protein |
| SJA_C1-27730 | 2,773,963 | 2,774,205 | + | 243 | acyl carrier protein |
| SJA_C1-27740 | 2,774,355 | 2,775,572 | + | 1,218 | 8-amino-7-oxononanoate synthase |
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.
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