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CDS Information : ACMV_06390

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close this sectionGenomic map

Display Clone

Acidiphilium multivorum AIU301 (= NBRC 100883) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Acidiphilium multivorum AIU301 (= NBRC 100883)
Replicon chromosome
Start / Stop / Direction 724,118 / 722,889 / -
Location complement(722889..724118)
Type CDS
Length 1,230 bp (409 aa)

close this sectionAnnotation

Product isocitrate dehydrogenase
Synonym: oxalosuccinate decarboxylase
Gene name icd
Functional category Metabolism
- Carbohydrate Metabolism
EC number 1.1.1.42
Note
KEGG pathway map:00020 KO:K00031
map:00480 KO:K00031
map:00720 KO:K00031
map:01061 KO:K00031
map:01062 KO:K00031
map:01063 KO:K00031
map:01064 KO:K00031
map:01065 KO:K00031
map:01066 KO:K00031
map:01070 KO:K00031
map:01100 KO:K00031
map:04146 KO:K00031
Sequence feature
References Family/Domain:IPR001804
Uniprot:P21954 Pubmed:1989987

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0A5FW07_ACICJIsocitrate dehydrogenase (NADP)Alignment
2E=0C7JDY1_ACEP3Isocitrate dehydrogenaseAlignment
3E=0C7L883_ACEPAIsocitrate dehydrogenaseAlignment
4E=0C7KYF9_ACEPAIsocitrate dehydrogenaseAlignment
5E=0C7KP44_ACEPAIsocitrate dehydrogenaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR001804 Isocitrate/isopropylmalate dehydrogenase (Family)
 [5-391]  5.20000000000001e-66 PF00180
PF00180   Iso_dh
 [1-406]  G3DSA:3.40.718.10
G3DSA:3.40.718.10   IDH_IMDH
 [270-289]  PS00470
PS00470   IDH_IMDH
IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic (Family)
 [1-406]  PIRSF000108
PIRSF000108   IDH_NADP
 [2-405]  TIGR00127
TIGR00127   nadp_idh_euk
IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site (Conserved_site)
 [270-289]  PS00470
PS00470   IDH_IMDH
IPR024084 Isopropylmalate dehydrogenase-like domain (Domain)
 [5-391]  5.20000000000001e-66 PF00180
PF00180   Iso_dh
 [1-406]  G3DSA:3.40.718.10
G3DSA:3.40.718.10   IDH_IMDH
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 409 amino acids
molecular mass 45,768.28 Da
pI 6.13
aa composition
AlaValLeuIlePheTrpProMetGlySer
9
(37aa)
6.4
(26aa)
7.3
(30aa)
7.1
(29aa)
4.2
(17aa)
1.7
(7aa)
4.6
(19aa)
2.7
(11aa)
7.3
(30aa)
4.4
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.6
(27aa)
1
(4aa)
3.4
(14aa)
2.4
(10aa)
3.9
(16aa)
7.3
(30aa)
2
(8aa)
4.9
(20aa)
7.6
(31aa)
6.1
(25aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.