CDS Information : ACMV_07250

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Genomic map

Display	Clone

Acidiphilium multivorum AIU301 (= NBRC 100883) chromosome

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Overview
Genome
Clone

Center position		change
ID		change
Gene name		change

Genome	Display	Sync
chromosome

Location

Organism	Acidiphilium multivorum AIU301 (= NBRC 100883)
Replicon	chromosome
Start / Stop / Direction	815,996 / 815,391 / -
Location	complement(815391..815996)
Type	CDS
Length	606 bp (201 aa)

Annotation

Product	superoxide dismutase
Gene name	sodB
Functional category	Transport and Cellular Process - Cellular process
EC number	1.15.1.1
Note
KEGG pathway
Sequence feature
References	Family/Domain:IPR001189 Uniprot:O30970 Pubmed:9765573

Computational search results

BLASTP
Database:UniProtKB:2010_04

show BLAST table

1	E=1e-113	A5FXR1_ACICJ	Superoxide dismutase	Alignment
2	E=6e-86	Q0BTK0_GRABC	Superoxide dismutase	Alignment
3	E=7e-84	C4WII9_9RHIZ	Superoxide dismutase	Alignment
4	E=1e-82	A6WW11_OCHA4	Superoxide dismutase	Alignment
5	E=1e-81	Q5FQ07_GLUOX	Superoxide dismutase	Alignment

HAMAP

No significant hit

InterPro
Database:interpro:26.0

IPR001189 Manganese and iron superoxide dismutase (Family)
	PR01703 MNSODISMTASE
	PF02777 Sod_Fe_C
	PF00081 Sod_Fe_N
	SSF46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
	PS00088 SOD_MN
	PIRSF000349 Superoxide dismutase, Mn/Fe specific
	SSF54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
IPR019831 Manganese/iron superoxide dismutase, N-terminal (Domain)
	SSF46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
	PF00081 Sod_Fe_N
IPR019832 Manganese/iron superoxide dismutase, C-terminal (Domain)
	SSF54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
	PF02777 Sod_Fe_C
IPR019833 Manganese/iron superoxide dismutase, binding site (Binding_site)
	PS00088 SOD_MN

SignalP

No significant hit

TMHMM

No significant hit

SOSUI

No significant hit

Calculated information (Amino acid sequence)

size of protein

201 amino acids

molecular mass

22,155.98 Da

6.74

aa composition

Ala	Val	Leu	Ile	Phe	Trp	Pro	Met	Gly	Ser
12.4 (25aa)	4 (8aa)	11.4 (23aa)	2 (4aa)	5 (10aa)	3 (6aa)	5 (10aa)	1.5 (3aa)	10 (20aa)	2.5 (5aa)
Thr	Cys	Asn	Gln	Tyr	Lys	His	Arg	Asp	Glu
5.5 (11aa)	1 (2aa)	6 (12aa)	4 (8aa)	3.5 (7aa)	6 (12aa)	5.5 (11aa)	2 (4aa)	4.5 (9aa)	5.5 (11aa)

Sequence

>ACMV_07250 superoxide dismutase
ATGGCCTTTGAACTCCCCGCGTTGCCCTATGCGCACGCAGCCCTTGCCGCGCATGGCATG
TGCCAGGAAACGCTCGAACTGCACCACGGCAAGCACCATCAGGCCTATGTGACGGCGCTG
AACGGTTTCGTCGAGAAGAACGCCGACCTGCAGGGCAAGAGCCTTGAGGAGATCGTCGCC
TTCACCTACAACAAGGCCGATCTCGCGCCGGTGTTCAACAATGCCGGGCAGCACTGGAAC
CACAATCTGTTCTGGCAGTGCATGTCGCCGACCGACGGCGGCAAGCTGCCGGGCCGGCTG
GAAGCGAAAATCGCCGAGGACTTCGGCGGCGTCGCGCAGTTCAAGGACGCGTTCAAGACC
GCCGGCACCACCCAGTTCGGCTCTGGCTGGGCCTGGCTGATCCTGACCCCCGGCGGCAAG
CTCGCCGTGACAAAGACGCCGAACGGCTCCAACCCGGTCGCCACCGGCGAGGGCAAGCCG
CTGCTCGGCCTCGATGTGTGGGAGCACTCCTACTATCTCGATTTCCGCAACCGCCGGCCG
GACTATATCCAGAACTGGCTCGACAAGCTCGCCAACTATGCCCACGCCGAGCACCTGCTG
GGCTGA


>ACMV_07250 superoxide dismutase
MAFELPALPYAHAALAAHGMCQETLELHHGKHHQAYVTALNGFVEKNADLQGKSLEEIVA
FTYNKADLAPVFNNAGQHWNHNLFWQCMSPTDGGKLPGRLEAKIAEDFGGVAQFKDAFKT
AGTTQFGSGWAWLILTPGGKLAVTKTPNGSNPVATGEGKPLLGLDVWEHSYYLDFRNRRP
DYIQNWLDKLANYAHAEHLLG

Distribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.