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CDS Information : ACMV_07250

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close this sectionGenomic map

Display Clone

Acidiphilium multivorum AIU301 (= NBRC 100883) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Acidiphilium multivorum AIU301 (= NBRC 100883)
Replicon chromosome
Start / Stop / Direction 815,996 / 815,391 / -
Location complement(815391..815996)
Type CDS
Length 606 bp (201 aa)

close this sectionAnnotation

Product superoxide dismutase
Gene name sodB
Functional category Transport and Cellular Process
- Cellular process
EC number 1.15.1.1
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR001189
Uniprot:O30970 Pubmed:9765573

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-113A5FXR1_ACICJSuperoxide dismutaseAlignment
2E=6e-86Q0BTK0_GRABCSuperoxide dismutaseAlignment
3E=7e-84C4WII9_9RHIZSuperoxide dismutaseAlignment
4E=1e-82A6WW11_OCHA4Superoxide dismutaseAlignment
5E=1e-81Q5FQ07_GLUOXSuperoxide dismutaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR001189 Manganese and iron superoxide dismutase (Family)
 [6-17]  1.4e-21 PR01703 [28-41]  1.4e-21 PR01703 [72-85]  1.4e-21 PR01703 [125-133]  1.4e-21 PR01703 [163-175]  1.4e-21 PR01703
PR01703   MNSODISMTASE
 [98-197]  3.9e-32 PF02777
PF02777   Sod_Fe_C
 [3-89]  1.3e-25 PF00081
PF00081   Sod_Fe_N
 [1-90]  6.8e-32 SSF46609
SSF46609   Fe,Mn superoxide dismutase (SOD), N-terminal domain
 [165-172]  PS00088
PS00088   SOD_MN
 [1-195]  1.1e-96 PIRSF000349
PIRSF000349   Superoxide dismutase, Mn/Fe specific
 [91-200]  2.5e-34 SSF54719
SSF54719   Fe,Mn superoxide dismutase (SOD), C-terminal domain
IPR019831 Manganese/iron superoxide dismutase, N-terminal (Domain)
 [1-90]  6.8e-32 SSF46609
SSF46609   Fe,Mn superoxide dismutase (SOD), N-terminal domain
 [3-89]  1.3e-25 PF00081
PF00081   Sod_Fe_N
IPR019832 Manganese/iron superoxide dismutase, C-terminal (Domain)
 [91-200]  2.5e-34 SSF54719
SSF54719   Fe,Mn superoxide dismutase (SOD), C-terminal domain
 [98-197]  3.9e-32 PF02777
PF02777   Sod_Fe_C
IPR019833 Manganese/iron superoxide dismutase, binding site (Binding_site)
 [165-172]  PS00088
PS00088   SOD_MN
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 201 amino acids
molecular mass 22,155.98 Da
pI 6.74
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.4
(25aa)
4
(8aa)
11.4
(23aa)
2
(4aa)
5
(10aa)
3
(6aa)
5
(10aa)
1.5
(3aa)
10
(20aa)
2.5
(5aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.5
(11aa)
1
(2aa)
6
(12aa)
4
(8aa)
3.5
(7aa)
6
(12aa)
5.5
(11aa)
2
(4aa)
4.5
(9aa)
5.5
(11aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.