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CDS Information : ACMV_10880

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close this sectionGenomic map

Display Clone

Acidiphilium multivorum AIU301 (= NBRC 100883) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Acidiphilium multivorum AIU301 (= NBRC 100883)
Replicon chromosome
Start / Stop / Direction 1,230,894 / 1,230,466 / -
Location complement(1230466..1230894)
Type CDS
Length 429 bp (142 aa)

close this sectionAnnotation

Product ribulose bisphosphate carboxylase small chain
Gene name cbbS
Functional category Metabolism
- Carbohydrate Metabolism
EC number 4.1.1.39
Note
KEGG pathway map:00630 KO:K01602
map:00710 KO:K01602
Sequence feature
References Family/Domain:IPR000894
Uniprot:P09658 Pubmed:2820933

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=2e-80A5FWR2_ACICJRibulose 1,5-bisphosphate carboxylase small subunitAlignment
2E=1e-59A5E994_BRASBRibulose 1,5-bisphosphate carboxylase small subunitAlignment
3E=1e-58D2MCS5_RHOPARibulose-bisphosphate carboxylaseAlignment
4E=4e-58Q6N9I9_RHOPARibulose-bisphosphate carboxylase small chainAlignment
5E=4e-58B3Q7E2_RHOPTRibulose-bisphosphate carboxylaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR000894 Ribulose bisphosphate carboxylase, small chain (Domain)
 [1-138]  1.2e-52 SSF55239
SSF55239   RuBisCO_small
 [1-117]  8e-42 G3DSA:3.30.190.10
G3DSA:3.30.190.10   RuBisCO_small
 [5-103]  6.90000000000001e-34 PF00101
PF00101   RuBisCO_small
IPR000894 Ribulose bisphosphate carboxylase, small chain (Family)
 [1-138]  1.2e-52 SSF55239
SSF55239   RuBisCO_small
 [1-117]  8e-42 G3DSA:3.30.190.10
G3DSA:3.30.190.10   RuBisCO_small
 [5-103]  6.90000000000001e-34 PF00101
PF00101   RuBisCO_small
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 142 amino acids
molecular mass 16,616.77 Da
pI 5.26
aa composition
AlaValLeuIlePheTrpProMetGlySer
7
(10aa)
2.8
(4aa)
7
(10aa)
5.6
(8aa)
4.2
(6aa)
2.8
(4aa)
4.9
(7aa)
4.2
(6aa)
5.6
(8aa)
5.6
(8aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.3
(9aa)
2.8
(4aa)
2.8
(4aa)
4.2
(6aa)
4.9
(7aa)
2.8
(4aa)
1.4
(2aa)
9.9
(14aa)
8.5
(12aa)
6.3
(9aa)

open this sectionSequence

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.