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CDS Information : ANT_17770

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close this sectionGenomic map

Display Clone

Anaerolinea thermophila UNI-1T (= NBRC 100420T) chromosome

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Overview 
Genome
Proteome 
Clone

close this sectionLocation

Organism Anaerolinea thermophila UNI-1T (= NBRC 100420T)
Replicon chromosome
Start / Stop / Direction 2,007,276 / 2,007,893 / +
Location 2007276..2007893
Type CDS
Length 618 bp (205 aa)

close this sectionAnnotation

Product NAD-reducing hydrogenase subunit
Gene name
Functional category Metabolism
- Energy Metabolism
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR002023
Uniprot:Q46505 Pubmed:7751270,9485416

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=4e-36C3QPZ9_9BACENADH-ubiquinone oxidoreductase subunitAlignment
2E=5e-36B3CBD7_9BACEPutative uncharacterized proteinAlignment
3E=6e-36B8D2G1_HALOHNADH dehydrogenase (Ubiquinone) 24 kDa subunitAlignment
4E=1e-35B0TIC6_HELMINADH dehydrogenase conserved domain protein, nuoe and nuofAlignment
5E=2e-35A5ZGY5_9BACEPutative uncharacterized proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:26.0
IPR002023 NADH dehydrogenase (ubiquinone), 24 kDa subunit (Family)
 [55-196]  4.8e-44 PF01257
PF01257   Complex1_24kDa
 [34-205]  1.3e-49 PIRSF000216
PIRSF000216   NADH dehydrogenase [ubiquinone] (complex I), flavoprotein 2/NADH:quinone oxidoreductase (complex I), NuoE subunit
IPR012336 Thioredoxin-like fold (Domain)
 [117-198]  7.5e-18 SSF52833
SSF52833   Thioredoxin-like
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 205 amino acids
molecular mass 23,006.70 Da
pI 6.5
aa composition
AlaValLeuIlePheTrpProMetGlySer
3.4
(7aa)
7.8
(16aa)
6.8
(14aa)
10.7
(22aa)
4.9
(10aa)
0
(0aa)
5.9
(12aa)
2.9
(6aa)
6.8
(14aa)
5.9
(12aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.4
(11aa)
3.9
(8aa)
2.9
(6aa)
7.8
(16aa)
2
(4aa)
4.9
(10aa)
2.9
(6aa)
4.4
(9aa)
3.9
(8aa)
6.8
(14aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G21-001-075 AT1FE70L00005H02 1,986,531 2,020,851 34,321

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.