CDS Information : AO090003000872

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Aspergillus oryzae RIB40 (= NBRC 100959) chromosome2	Legend Jump
Contig Overview  Genome Proteome  Clone

Center position	SC001SC003	change
ID		change
Gene name		change

Organism	Aspergillus oryzae RIB40 (= NBRC 100959)
Replicon	chromosome2
Contig	SC003
Start / Stop / Direction	2,366,739 / 2,367,707 / +
Location	join(2366739..2366742, 2367128..2367489, 2367549..2367707)
Type	CDS
Length	525 bp (174 aa)
Intron	2366743..2367127, 2367490..2367548

Product	60S ribosomal protein L18A
Gene name
Functional category	Information storage and processing - [J] Translation, ribosomal structure and biogenesis
EC number
Note
KEGG pathway
Sequence feature
References

Proteome results	2D-PAGE YPD_liquid (1) 1D-PAGE-LC YPD_liquid 1D-PAGE-LC YPD_filter MDLC YPD_liquide Show sequence

BLASTP Database:UniProtKB:2010_04 show BLAST table	1 E=2e-98 Q2UKB9_ASPOR RIB40 DNA, SC003 Alignment 2 E=7e-98 B8N180_ASPFN Ribosomal L18ae protein family Alignment 3 E=1e-91 A1CRL0_ASPCL Ribosomal L18ae protein family Alignment 4 E=2e-91 Q0CRD9_ASPTN 60S ribosomal protein L20 Alignment 5 E=2e-90 A1D4H1_NEOFI Ribosomal L18ae protein family Alignment
HAMAP	No significant hit
InterPro	No significant hit
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	174 amino acids
molecular mass	20,405.81 Da
pI	11.05
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 8.6 (15aa) 6.3 (11aa) 7.5 (13aa) 6.3 (11aa) 5.2 (9aa) 1.1 (2aa) 5.2 (9aa) 2.9 (5aa) 4 (7aa) 5.2 (9aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.6 (8aa) 0 (0aa) 4 (7aa) 2.9 (5aa) 4.6 (8aa) 9.2 (16aa) 3.4 (6aa) 10.3 (18aa) 2.9 (5aa) 5.7 (10aa)

>AO090003000872 60S ribosomal protein L18A
ATGGGGCGTCTCACCGAGTACCAGGTCATCGGGCGTCATCTGCCCACCGAGGCTAACCCC
ACGCCCAAGCTTTACCGCATGCGCATCTTTGCGCCTAACACTGTCGTGGCCAAGTCCCGG
TTCTGGTACTTCTTGACCCAGCTCCGTAAGGTCAAGAAGGCCAACGGTGAGATCGTCAGC
CTCAATGTCATCCCCGAGAAGCGTCACCTGAAGGTCAAGAACTTCGGTATCTGGATCCGC
TACGACTCTCGCTCCGGTACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGTACC
GAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCCCGTTTCGGCTCC
ATCCACATCCTCAAGGTTGTTGAGGTCGACAACGCCGACTCCATCCGCCGCCCCTACATC
AAGCAGCTCCTCCAGAAGGACCTCAAGTTCCCTCTGCCTCACCGTGCCGCCAAGTCCGAG
GGCAAGAAGATCTTCGCTTACTCTCGTCCTGCTACCTTCGCTTAA


>AO090003000872 60S ribosomal protein L18A
MGRLTEYQVIGRHLPTEANPTPKLYRMRIFAPNTVVAKSRFWYFLTQLRKVKKANGEIVS
LNVIPEKRHLKVKNFGIWIRYDSRSGTHNMYKEFREMSRTEAVEALYQDMAARHRARFGS
IHILKVVEVDNADSIRRPYIKQLLQKDLKFPLPHRAAKSEGKKIFAYSRPATFA


>AO090003000872 with intron
ATGGGTAAGTGAAAAAAATTTCCCTCTTCGGACCCCTTGACCCTGGCGAATCGGTGCGGT
GTATCCCCTTGCGAACGTTGAACGACACGATGCCGGAGGAAGAATGTATCGAGGAGGAGC
ATGAAAATTATATGGACCCGATTCAGCGAAGGCGATAATGGTGGATTTTGTGAAAAGGAT
TTTATTTTAGTACGAATGGACGTTACGCACGGTCGGAAAATTGGAATTTTTACGGTCGCA
TATCGTGGAAAATATTCTCGACTCTCGAGCATCGAAAGGATTGACAACGTACCGCACGGA
ATTCAGCGCACCGATTCTCACCGCTGGGATGATTGAACGCCACTAATTGAAGATTTTGAA
AGTGCCAAATGACTGACTGGTTATTATAGGGCGTCTCACCGAGTACCAGGTCATCGGGCG
TCATCTGCCCACCGAGGCTAACCCCACGCCCAAGCTTTACCGCATGCGCATCTTTGCGCC
TAACACTGTCGTGGCCAAGTCCCGGTTCTGGTACTTCTTGACCCAGCTCCGTAAGGTCAA
GAAGGCCAACGGTGAGATCGTCAGCCTCAATGTCATCCCCGAGAAGCGTCACCTGAAGGT
CAAGAACTTCGGTATCTGGATCCGCTACGACTCTCGCTCCGGTACCCACAACATGTACAA
GGAGTTCCGTGAGATGAGCCGTACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGC
CCGCCACCGTGCCCGTTTCGGCTCCATCCACGTATGTTTCTGCTGATCGTGAACGATCCC
TGATATGAATTGTCTAACGATACTGTGCAGATCCTCAAGGTTGTTGAGGTCGACAACGCC
GACTCCATCCGCCGCCCCTACATCAAGCAGCTCCTCCAGAAGGACCTCAAGTTCCCTCTG
CCTCACCGTGCCGCCAAGTCCGAGGGCAAGAAGATCTTCGCTTACTCTCGTCCTGCTACC
TTCGCTTAA

NBRC No.	clone name	start	stop	length(bp)
G07-003-296	B070B04	2,262,136	2,380,603	118,468
G07-003-299	B016E10	2,316,584	2,435,490	118,907
G07-003-300	B085H02	2,316,627	2,376,242	59,616
G07-003-301	B043C09	2,319,365	2,438,422	119,058
G07-003-302	B029B03	2,343,898	2,438,422	94,525
G07-003-303	B036C04	2,350,364	2,490,794	140,431
G07-003-304	B032B01	2,350,402	2,435,431	85,030
G07-003-305	B061C10	2,350,422	2,438,428	88,007
G07-003-306	B034G12	2,350,454	2,408,443	57,990
G07-003-307	B019D08	2,353,819	2,412,088	58,270

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.