Please make javascript effective. CDS Information : AO090003001230
Genomic map
Information storage and processing [J] Translation, ribosomal structure and biogenesis [A] RNA processing and modification [K] Transcription [L] Replication, recombination and repair [B] Chromatin structure and dynamics Cellular processes and signaling [D] Cell cycle control, cell division, chromosome partitioning [O] Posttranslational modification, protein turnover, chaperones [Y] Nuclear structure [V] Defense mechanisms [T] Signal transduction mechanisms [M] Cell wall/membrane/envelope biogenesis [N] Cell motility [Z] Cytoskeleton [W] Extracellular structures [U] Intracellular trafficking, secretion, and vesicular transport Metabolism [C] Energy production and conversion [G] Carbohydrate transport and metabolism [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism [P] Inorganic ion transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism Poorly characterized [R] General function prediction only [S] Function unknown Bi-functional protein Unannotated
Location
Organism
Aspergillus oryzae RIB40 (= NBRC 100959 )
Replicon
chromosome2
Contig
SC003
Start / Stop / Direction
3,349,846 / 3,350,803 / +
Location
join(3349846..3349885, 3349944..3350185, 3350251..3350351, 3350452..3350803)
Type
CDS
Length
735 bp (244 aa)
Intron 3349886..3349943, 3350186..3350250, 3350352..3350451
Annotation
Product
vesicle coat protein clathrin, light chain
Gene name
Functional category
Cellular processes and signaling
EC number
Note
KEGG pathway
Sequence feature
References
Proteome
Proteome results
2D-PAGE YPD_liquid (1)
1D-PAGE-LC YPD_liquid
Show sequence
Computational search results
BLASTPDatabase:UniProtKB:2010_04
HAMAP
No significant hit
InterPro
No significant hit
SignalP
No significant hit
TMHMM
No significant hit
SOSUI
No significant hit
Calculated information (Amino acid sequence)
size of protein
244 amino acids
molecular mass
26,199.27 Da
pI
4.11
aa composition
Ala Val Leu Ile Phe Trp Pro Met Gly Ser 13.1 4.5 4.5 3.7 4.5 0.8 5.3 0.8 9.4 6.1 Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.1 0 3.3 4.5 1.2 4.9 0.8 5.7 10.7 9.8
Sequence
>AO090003001230 vesicle coat protein clathrin, light chain
ATGGCAGACCGATTCCCCTCACTAGAAGACTTCTCCGCTGGCCAAACTGAAGTCGTGGAG
ACCAACGGCACAGATGCCGATGACTTCCTAGCCCGCGAGCGAGCCGTTCTAGGTGACGAT
GCAGAGCAGTTTGCTACCCCTCAAGACCACGTTGCTACCACGGACGATGTGAATGCTGGC
GATGACGATTTACTGGGCGGTGCGGAGGACGCTCCTGCTGGCGCAGCCCCCGAGATCTCC
GGATTCGAATCTTCTTTCCCTGCTATTGAGACACAGAATGAGCAAGTTGCGCCTGGCGGC
ATGATCACTGGAACCGGCGCTCCCTTCCCGCCTACGGGCTTCTCGAGCTACCAAGCGCCG
GAGGAGGAACCCGAGCCCGTTAGGGAATGGCGCGAAAGACGAGATGCGGACATTGCACGC
CGCGCGGAGATCTCCGAAGAAAAGAAGCAAGCGACTATTAAGAAGGCCCAAGAAGATATC
GATGACTTTTACGTTTCTTACAACAACAAGACCGACAAGCTGCATGCTCAGACTCGTGCG
GATGCCGAACAATTCCTCGCCAATCGCGAAGACACTTCTTCCGGAGGTACCAGCTGGGAT
CGTATCGCAAAACTTGTTGATGTCTCTGGAAAGGGCGCTAAGGGTGGCGCGAACGGATCT
GGTAAGGAACGTTTCCGTCAGCTTTTGGTCGATCTGAAGAAGGACGAGAATGCCCCCGGT
GCCAGTGGCATCTAG
>AO090003001230 vesicle coat protein clathrin, light chain
MADRFPSLEDFSAGQTEVVETNGTDADDFLARERAVLGDDAEQFATPQDHVATTDDVNAG
DDDLLGGAEDAPAGAAPEISGFESSFPAIETQNEQVAPGGMITGTGAPFPPTGFSSYQAP
EEEPEPVREWRERRDADIARRAEISEEKKQATIKKAQEDIDDFYVSYNNKTDKLHAQTRA
DAEQFLANREDTSSGGTSWDRIAKLVDVSGKGAKGGANGSGKERFRQLLVDLKKDENAPG
ASGI
>AO090003001230 with intron
ATGGCAGACCGATTCCCCTCACTAGAAGACTTCTCCGCTGGTCAGGATCCCACATGCAAC
CCCCCGTTCCAAGTATATATGTACTAACTGTTTCCCAGGCCAAACTGAAGTCGTGGAGAC
CAACGGCACAGATGCCGATGACTTCCTAGCCCGCGAGCGAGCCGTTCTAGGTGACGATGC
AGAGCAGTTTGCTACCCCTCAAGACCACGTTGCTACCACGGACGATGTGAATGCTGGCGA
TGACGATTTACTGGGCGGTGCGGAGGACGCTCCTGCTGGCGCAGCCCCCGAGATCTCCGG
ATTCGAATCTTCTTTCCCTGCTATTGAGACACAGAATGAGGTACGGATGTGAGCGCTGAA
GCCGTCGCGTATGACTGTTTAATTGACATGTGTTTCCTTGAACAGCAAGTTGCGCCTGGC
GGCATGATCACTGGAACCGGCGCTCCCTTCCCGCCTACGGGCTTCTCGAGCTACCAAGCG
CCGGAGGAGGAACCCGAGCCCGTTAGGTATGTATCATAAATTCCAATCGATGATTGTCAT
AGACTGGGCATACCAGCCGACGGC GTACTTTCCATCCTCATGACGCTAACTTGGGAACTC
CTCCAGGGAATGGCGCGAAAGACGAGATGCGGACATTGCACGCCGCGCGGAGATCTCCGA
AGAAAAGAAGCAAGCGACTATTAAGAAGGCCCAAGAAGATATCGATGACTTTTACGTTTC
TTACAACAACAAGACCGACAAGCTGCATGCTCAGACTCGTGCGGATGCCGAACAATTCCT
CGCCAATCGCGAAGACACTTCTTCCGGAGGTACCAGCTGGGATCGTATCGCAAAACTTGT
TGATGTCTCTGGAAAGGGCGCTAAGGGTGGCGCGAACGGATCTGGTAAGGAACGTTTCCG
TCAGCTTTTGGTCGATCTGAAGAAGGACGAGAATGCCCCCGGTGCCAGTGGCATCTAG
Covered clones
NBRC No.
clone name
start
stop
length(bp)
G07-003-410 B087E07
3,272,932
3,429,510
156,579
G07-003-411 B071H05
3,272,934
3,424,989
152,056
G07-003-413 B074D11
3,287,434
3,385,801
98,368
G07-003-415 B070C04
3,290,375
3,360,877
70,503
G07-003-416 B076A09
3,296,774
3,365,420
68,647
G07-003-417 B065E04
3,299,726
3,365,417
65,692
G07-003-418 B020B10
3,302,611
3,457,888
155,278
G07-003-419 B087B08
3,306,289
3,360,878
54,590
G07-003-420 B012B08
3,328,139
3,413,020
84,882
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at
http://www.nbrc.nite.go.jp/e/mdna-e.html .
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Sequence