Please make javascript effective. CDS Information : AO090011000577
Genomic map
Information storage and processing [J] Translation, ribosomal structure and biogenesis [A] RNA processing and modification [K] Transcription [L] Replication, recombination and repair [B] Chromatin structure and dynamics Cellular processes and signaling [D] Cell cycle control, cell division, chromosome partitioning [O] Posttranslational modification, protein turnover, chaperones [Y] Nuclear structure [V] Defense mechanisms [T] Signal transduction mechanisms [M] Cell wall/membrane/envelope biogenesis [N] Cell motility [Z] Cytoskeleton [W] Extracellular structures [U] Intracellular trafficking, secretion, and vesicular transport Metabolism [C] Energy production and conversion [G] Carbohydrate transport and metabolism [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism [P] Inorganic ion transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism Poorly characterized [R] General function prediction only [S] Function unknown Bi-functional protein Unannotated
Location
Organism
Aspergillus oryzae RIB40 (= NBRC 100959 )
Replicon
chromosome7
Contig
SC011
Start / Stop / Direction
1,464,004 / 1,461,103 / -
Location
complement(join(1461103..1462257, 1462314..1463582, 1463641..1463672, 1463734..1463755, 1463808..1463870, 1463987..1464004))
Type
CDS
Length
2,559 bp (852 aa)
Intron 1463986..1463871, 1463807..1463756, 1463733..1463673, 1463640..1463583, 1462313..1462258
Annotation
Product
vesicle coat complex COPI, beta' subunit
Gene name
Functional category
Cellular processes and signaling
EC number
Note
KEGG pathway
Sequence feature
References
Proteome
Proteome results
1D-PAGE-LC YPD_liquid
1D-PAGE-LC YPD_filter
Show sequence
Related links to external database Computational search results
BLASTPDatabase:UniProtKB:2010_04
HAMAP
No significant hit
InterPro
No significant hit
SignalP
No significant hit
TMHMM
No significant hit
SOSUI
No significant hit
Calculated information (Amino acid sequence)
size of protein
852 amino acids
molecular mass
94,735.26 Da
pI
4.56
aa composition
Ala Val Leu Ile Phe Trp Pro Met Gly Ser 8.2 8.3 8.7 4.7 3.5 2.5 3.6 1.4 7.7 6.7 Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.1 1.3 4.2 3.3 4 4.8 2.1 4.3 7.2 7.3
Sequence
>AO090011000577 vesicle coat complex COPI, beta' subunit
ATGAGACTGGATGTTAAGAGACAGCTCTTTGCTCGCTCGGAGCGAGTAAAGGGCATTGAT
TTCCATCCGACGGAGCCATGGATCCTGACAACCTTATACAGCGGTCACGTATACATCTGG
TCTTACGAGACTCAGTCAATCATCAAAACCTTTGAACTTACCGATGTCCCCGTTCGAGCT
GGTCGGTTTATTGCCCGCAAAAACTGGATTGTTTGCGGATCAGATGACTTCCAACTCCGC
GTATACAACTACAACACTTCCGAGAAGATTGCCTCGTTTGAGGCCCACCCAGACTATATC
CGTTCGATTGCTGTTCATCCCACCCAACCTTTCGTTCTTACAGCCTCCGATGACATGACA
ATTAAGCTCTGGGATTGGGAGAAAGGTTGGAAGTGTGTCCAGGTGTACGAAGGCCACGCT
CATTATGTGATGGGACTGTCCATTAACCCTAAGGACACAAACACATTCGCATCGGCTTGT
TTGGATCGGACGGTCAAGATCTGGAGTCTTGGTTCCCCACATGCCAATTTCACATTGGAG
GCCCACGAGACGAAGGGTGTTAACTATGTCGACTACTATCCGCAAGCCGATAAGCCGTAT
CTTCTTACCACCTCAGATGACAAGACGGTCAAGATCTGGGATTATACCACAAAAGCGCTC
ATTGCGACATTGGAAGGGCACACAAGTAATGTTTCCTTCGCCTGCTATCACCCAGAATTA
CCAGTGATCATTTCGGGATCTGAAGATGGAACCATCAAGATTTGGCACGCAAACACATAC
CGATTGGAGCAATCATTAAGCTATGGCCTTGAAAGAGCGTGGTGTGTTGCATACCAGCGT
GGTAAACAAGGTATCGCAATGGGGTTTGATGATGGTGCAGTGGTCGTGAAAATGGGTCGC
GAGGAACCCGCCGTCTCTATGGACGGATCAGGAAAGGTCGTCTGGGCAAGACACAATGAA
GTGGTTTCAACAGTCATTAAGGGTGGTGATGCTACTATCAAGGATGGCGCACCAATCTCC
TTACCGACAAAAGAGCTGGGCTCATGTGAGGTCTACCCCCAGACACTATCACACTCGCCC
AATGGCCGTTTCGTTTCAGTTTGCGGTGATGGAGAATATATCATCTACACTGCTCTTGCT
TGGAGAAATAAGGCATTCGGGCAAGCACTTGATTTCGCCTGGGGCTCGAAGGATAACAGC
AACGACTATGCTATTCGCGAGTCACCAACTAGTGTCAAGATCTTTAGGAATTTCAAGGAG
GTCAGCGGCGGCCTAGATGTCGGCTTCCAAGCCGAAGGACTCACTGATGGTGTGCTTCTT
GGTGTCAAAGGACAAGGAGGCATTGGTATGTTCGATTGGGAGACCGGTAATCTAGTCCGT
CGTATTGAAGTCGACCCGAAGGCCGTTTATTGGTCTGAGTCTGGAGAGTTGGTTACTCTT
GCCTGTGAGGACTCATTCTACGTGCTCCGATTCTCGAGGGAAAACTATATCAACGGCCTC
AATGAGGGGGAAGCCGACGAGGATGGTGTTGAGTCGGCCTTCGAAGTCGTCACTGATGTC
AATGAGACTGTCAGGACAGGTCAATGGGTTGGTGACTGCTTTATCTACACCAATTCGACC
AACCGCCTGAACTACCTTGTTGGTGATCAGACCTACACAATCTCTCACTTTGACCAGGGA
ATGTATGTCCTTGGCTACTTGCCTCGCGATGGCAGGGTGTATCTAGCCGACAAGGATGTC
AATGTTGTTTCTTTTGGTCTTTCACTTAGCATGGTCGAGTACCAGACCGTGGTTCTTCGT
GGAGACATGGATATGGCAGCAGAGCTGCTGAAGGACATCCCGCAGGACCAGATCAACAAG
GTTGCGCGGTTCCTCGAAGGCCAGGGCTACAAGGACATGGCCCTTGAAGTTGCCACTGAC
CCCGAACATCGTTTCGACCTTGCCCTTTCTCTCAACAATCTCGACATTGCCCTCGAAATT
GCTCGTGAAGCTAACGTCGAACATAAATGGAAGACTGTTGGTGATGCTGCCCTGGCAGGA
TGGAATCTGGAATTGGCTCAGGAATGTTTCACCAATGCAAAGGATGTCGGCTCCCTTTTG
CTGTTGCACACCGCCAGCGGCAACAAGCAGGGTCTCCGTAACCTCGCAGAACAAGCGTCC
GAGGCCGGTCTGCACAATGTTGCTTTCTCTACCTTGTGGTCTCTCGGTGATATCGATGCC
TGCACAGATCTTCTTGTGCGGACCAACCGTCTCGCGGAAGCTGTCCTTTTCACACAAACC
TACAAGCCATCCCGGGCACCCGAGCTCGTAGTTCAGTGGAAGCAGTCGCTTGAGCAGTCT
GGAAAGACAAAGATCGCTCGCCTGATCGGTGTTTCTCCCGGTGCTCCCGACGCTACCGCC
GATGACGACCTCTTCCCAGAATGGGATGAGTACCTCCGCCTGGAGAAGGAAGGCGTTGTC
CCTGAGCCTCCTTCATCAGAGTCGCTTATCGACGTCAACGATGACGAACAAGCCGAGTCA
GCAGCCAACGGGGCTCCAGAGGTAGAAGCCGAAGCATGA
>AO090011000577 vesicle coat complex COPI, beta' subunit
MRLDVKRQLFARSERVKGIDFHPTEPWILTTLYSGHVYIWSYETQSIIKTFELTDVPVRA
GRFIARKNWIVCGSDDFQLRVYNYNTSEKIASFEAHPDYIRSIAVHPTQPFVLTASDDMT
IKLWDWEKGWKCVQVYEGHAHYVMGLSINPKDTNTFASACLDRTVKIWSLGSPHANFTLE
AHETKGVNYVDYYPQADKPYLLTTSDDKTVKIWDYTTKALIATLEGHTSNVSFACYHPEL
PVIISGSEDGTIKIWHANTYRLEQSLSYGLERAWCVAYQRGKQGIAMGFDDGAVVVKMGR
EEPAVSMDGSGKVVWARHNEVVSTVIKGGDATIKDGAPISLPTKELGSCEVYPQTLSHSP
NGRFVSVCGDGEYIIYTALAWRNKAFGQALDFAWGSKDNSNDYAIRESPTSVKIFRNFKE
VSGGLDVGFQAEGLTDGVLLGVKGQGGIGMFDWETGNLVRRIEVDPKAVYWSESGELVTL
ACEDSFYVLRFSRENYINGLNEGEADEDGVESAFEVVTDVNETVRTGQWVGDCFIYTNST
NRLNYLVGDQTYTISHFDQGMYVLGYLPRDGRVYLADKDVNVVSFGLSLSMVEYQTVVLR
GDMDMAAELLKDIPQDQINKVARFLEGQGYKDMALEVATDPEHRFDLALSLNNLDIALEI
AREANVEHKWKTVGDAALAGWNLELAQECFTNAKDVGSLLLLHTASGNKQGLRNLAEQAS
EAGLHNVAFSTLWSLGDIDACTDLLVRTNRLAEAVLFTQTYKPSRAPELVVQWKQSLEQS
GKTKIARLIGVSPGAPDATADDDLFPEWDEYLRLEKEGVVPEPPSSESLIDVNDDEQAES
AANGAPEVEAEA
>AO090011000577 with intron
ATGAGACTGGATGTTAAGGTACGCCGTGTCTTGTTTGGAACGATTCTCAATGTGGAATAG
GCTAGCGCTTCTTCATTTGGGGATACATTTAAAGGGAAATGATATTGTTGCTGACCATAA
TTGCAACGCAATAGAGACAGCTCTTTGCTCGCTCGGAGCGAGTAAAGGGCATTGATTTCC
ATCCGACGGAGCCATGGGTGAGTGCCTCTACGATCTCAGGTGCCGACACATTATACTGAC
TGGCCTCAGATCCTGACAACCTTATACAGCGGTGCGTTGGGGGATCTGCATTTAAATGGT
TATAGGCCGAATGCGCTAATCGGAATCCACAGGTCACGTATACATCTGGTCTTACGAGAC
TCAGGTAAGTGTTTGATGAGCAACGTCACGTCCAATTGTCTTCTGACCGTCAATCTCCGT
AGTCAATCATCAAAACCTTTGAACTTACCGATGTCCCCGTTCGAGCTGGTCGGTTTATTG
CCCGCAAAAACTGGATTGTTTGCGGATCAGATGACTTCCAACTCCGCGTATACAACTACA
ACACTTCCGAGAAGATTGCCTCGTTTGAGGCCCACCCAGACTATATCCGTTCGATTGCTG
TTCATCCCACCCAACCTTTCGTTCTTACAGCCTCCGATGACATGACAATTAAGCTCTGGG
ATTGGGAGAAAGGTTGGAAGTGTGTCCAGGTGTACGAAGGCCACGCTCATTATGTGATGG
GACTGTCCATTAACCCTAAGGACACAAACACATTCGCATCGGCTTGTTTGGATCGGACGG
TCAAGATCTGGAGTCTTGGTTCCCCACATGCCAATTTCACATTGGAGGCCCACGAGACGA
AGGGTGTTAACTATGTCGACTACTATCCGCAAGCCGATAAGCCGTATCTTCTTACCACCT
CAGATGACAAGACGGTCAAGATCTGGGATTATACCACAAAAGCGCTCATTGCGACATTGG
AAGGGCACACAAGTAATGTTTCCTTCGCCTGCTATCACCCAGAATTACCAGTGATCATTT
CGGGATCTGAAGATGGAACCATCAAGATTTGGCACGCAAACACATACCGATTGGAGCAAT
CATTAAGCTATGGCCTTGAAAGAGCGTGGTGTGTTGCATACCAGCGTGGTAAACAAGGTA
TCGCAATGGGGTTTGATGATGGTGCAGTGGTCGTGAAAATGGGTCGCGAGGAACCCGCCG
TCTCTATGGACGGATCAGGAAAGGTCGTCTGGGCAAGACACAATGAAGTGGTTTCAACAG
TCATTAAGGGTGGTGATGCTACTATCAAGGATGGCGCACCAATCTCCTTACCGACAAAAG
AGCTGGGCTCATGTGAGGTCTACCCCCAGACACTATCACACTCGCCCAATGGCCGTTTCG
TTTCAGTTTGCGGTGATGGAGAATATATCATCTACACTGCTCTTGCTTGGAGAAATAAGG
CATTCGGGCAAGCACTTGATTTCGCCTGGGGCTCGAAGGATAACAGCAACGACTATGCTA
TTCGCGAGTCACCAACTAGTGTCAAGATCTTTAGGAATTTCAAGGAGGTCAGCGGCGGCC
TAGATGTCGGCTTCCAAGCCGAAGGACTCACTGATGGTGTGCTTCTTGGTGTCAAAGGAC
AAGGAGGCATTGGTATGTTCGATTGGGAGACCGGTAATCTAGTCCGTCGTATTGAAGTCG
ACCCGAAGGCCGTAAGCATCACCGAAAAATATCCATTGTAAGTCTCAGCCGCTAACACTG
CTTCTAGGTTTATTGGTCTGAGTCTGGAGAGTTGGTTACTCTTGCCTGTGAGGACTCATT
CTACGTG CTCCGATTCTCGAGGGAAAACTATATCAACGGCCTCAATGAGGGGGAAGCCGA
CGAGGATGGTGTTGAGTCGGCCTTCGAAGTCGTCACTGATGTCAATGAGACTGTCAGGAC
AGGTCAATGGGTTGGTGACTGCTTTATCTACACCAATTCGACCAACCGCCTGAACTACCT
TGTTGGTGATCAGACCTACACAATCTCTCACTTTGACCAGGGAATGTATGTCCTTGGCTA
CTTGCCTCGCGATGGCAGGGTGTATCTAGCCGACAAGGATGTCAATGTTGTTTCTTTTGG
TCTTTCACTTAGCATGGTCGAGTACCAGACCGTGGTTCTTCGTGGAGACATGGATATGGC
AGCAGAGCTGCTGAAGGACATCCCGCAGGACCAGATCAACAAGGTTGCGCGGTTCCTCGA
AGGCCAGGGCTACAAGGACATGGCCCTTGAAGTTGCCACTGACCCCGAACATCGTTTCGA
CCTTGCCCTTTCTCTCAACAATCTCGACATTGCCCTCGAAATTGCTCGTGAAGCTAACGT
CGAACATAAATGGAAGACTGTTGGTGATGCTGCCCTGGCAGGATGGAATCTGGAATTGGC
TCAGGAATGTTTCACCAATGCAAAGGATGTCGGCTCCCTTTTGCTGTTGCACACCGCCAG
CGGCAACAAGCAGGGTCTCCGTAACCTCGCAGAACAAGCGTCCGAGGCCGGTCTGCACAA
TGTTGCTTTCTCTACCTTGTGGTCTCTCGGTGATATCGATGCCTGCACAGATCTTCTTGT
GCGGACCAACCGTCTCGCGGAAGCTGTCCTTTTCACACAAACCTACAAGCCATCCCGGGC
ACCCGAGCTCGTAGTTCAGTGGAAGCAGTCGCTTGAGCAGTCTGGAAAGACAAAGATCGC
TCGCCTGATCGGTGTTTCTCCCGGTGCTCCCGACGCTACCGCCGATGACGACCTCTTCCC
AGAATGGGATGAGTACCTCCGCCTGGAGAAGGAAGGCGTTGTCCCTGAGCCTCCTTCATC
AGAGTCGCTTATCGACGTCAACGATGACGAACAAGCCGAGTCAGCAGCCAACGGGGCTCC
AGAGGTAGAAGCCGAAGCATGA
Covered clones
NBRC No.
clone name
start
stop
length(bp)
G07-011-145 B049F10
1,312,847
1,500,192
187,346
G07-011-153 B006F01
1,385,316
1,558,284
172,969
G07-011-154 B050B08
1,411,206
1,470,719
59,514
G07-011-155 B042B05
1,411,874
1,502,501
90,628
G07-011-156 B074F10
1,411,918
1,515,371
103,454
G07-011-157 B062E09
1,412,482
1,492,461
79,980
G07-011-158 B067E04
1,424,401
1,530,621
106,221
G07-011-159 B081E05
1,427,552
1,500,225
72,674
G07-011-160 B007B09
1,444,020
1,557,507
113,488
G07-011-161 B091G12
1,444,632
1,517,477
72,846
G07-011-162 B053E07
1,444,637
1,502,495
57,859
G07-011-163 B089D09
1,449,927
1,605,848
155,922
G07-011-164 B040F12
1,449,932
1,506,565
56,634
G07-011-165 B088B05
1,449,964
1,502,906
52,943
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at
http://www.nbrc.nite.go.jp/e/mdna-e.html .
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Sequence