Please make javascript effective. CDS Information : AO090023000710
Genomic map
Information storage and processing [J] Translation, ribosomal structure and biogenesis [A] RNA processing and modification [K] Transcription [L] Replication, recombination and repair [B] Chromatin structure and dynamics Cellular processes and signaling [D] Cell cycle control, cell division, chromosome partitioning [O] Posttranslational modification, protein turnover, chaperones [Y] Nuclear structure [V] Defense mechanisms [T] Signal transduction mechanisms [M] Cell wall/membrane/envelope biogenesis [N] Cell motility [Z] Cytoskeleton [W] Extracellular structures [U] Intracellular trafficking, secretion, and vesicular transport Metabolism [C] Energy production and conversion [G] Carbohydrate transport and metabolism [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism [P] Inorganic ion transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism Poorly characterized [R] General function prediction only [S] Function unknown Bi-functional protein Unannotated
Location
Organism
Aspergillus oryzae RIB40 (= NBRC 100959 )
Replicon
chromosome3
Contig
SC023
Start / Stop / Direction
1,873,849 / 1,870,525 / -
Location
complement(join(1870525..1871105, 1871161..1871891, 1871947..1873424, 1873496..1873687, 1873751..1873849))
Type
CDS
Length
3,081 bp (1,026 aa)
Intron 1873750..1873688, 1873495..1873425, 1871946..1871892, 1871160..1871106
Annotation
Product
RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5
Gene name
Functional category
Information storage and processing
EC number
Note
KEGG pathway
Sequence feature
References
Related links to external database Computational search results
BLASTPDatabase:UniProtKB:2010_04
HAMAP
No significant hit
InterPro
No significant hit
SignalP
No significant hit
TMHMM
No significant hit
SOSUI
No significant hit
Calculated information (Amino acid sequence)
size of protein
1026 amino acids
molecular mass
111,285.26 Da
pI
4.82
aa composition
Ala Val Leu Ile Phe Trp Pro Met Gly Ser 9.3 6.7 5.6 2.9 2.1 1.2 7.1 3.1 10.3 6.9 Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.6 0.2 3 2.8 2.1 4.9 1.6 8 9.3 7.3
Sequence
>AO090023000710 RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5
ATGTCACGAAACATGCTGGATCATGACTTCGGTTCAGACGAAGAAGACGATGACTTCAAC
CCCGCTCCCGCATATGATTCAGATAATGAAGATGCCAGGCCGACGCATCAAGACCGGGAC
GATGATGACGATGAAGAAGATGTAAAGCCTTCACGACGAGCGGAACGTCGAGTCGGTAGC
GAGGAGGCAGACGATAACGAAGATGCCGATGGCCACGACGACGAGGAAGAAGACGAGAAC
GATGATGATGACGAGGAGGAGGAAGATGAAGATGAAGAGGGTGCCGTGTCTCGACCAAAA
AAGCGCAGAAGAAAGGGAGGCGTGGCCCATTTCTTCGAGGAAGAGGCTGGCGTCGATGAA
GATGAAGATGAGGCCGAGGACGAAGAGGATGAAATGGCCGAGCTTGGTGGGGAAATGCAT
CCAGATGATATGGATGCGCTCCCAGTCGGCGCTGAGACTGACGATCGTCGCCACCGACAG
CTTGATCGCCAGCGCGAGCTTGAGGCCAGCATGGATGCCGAGAAGCAGGCGCAGTTGCTC
AAAGAACGTTACGGACGAAACCGCGCTGCAGCTTCCGATGCAGTCGTCGTACCAAAGCGG
CTACTACTTCCTAGTGTCGAGGATCCTAGCATCTGGGGTGTCCGTTGTAAGCCCGGCAAA
GAACGGGAGGTTATTTTCGCCATCCAGAAACGTATAGAAGAGCGACCCATGGGCTCTCGC
AACCCTATGAAGATCATATCTGCCTTTGAACGTGGAGGAGCTATGAGTGGGTACATCTAT
GTTGAAGCACGCAGGCAAGCGGACGTCATGGATGCACTGCAAGATATGTCCAACGTCTAC
CCACGGACGAAGATGATTCTAGTTCCTGTGCGAGAAATGCCGGACCTTCTGCGGGTTCAA
AAATCCGAAGAACTCTTGCCCGGTGGCTGGGTCCGCATTAAACGTGGCAAATACCAAAAC
GATCTGGCCCAGATTGAAGAAGTTGAAACCAACGGTCTCGCTGTGACTGTTCGCTTGGTT
CCTCGCCTGGATTATGGCATGAACGAGGACATCGGTGCGCCTTTTATGGATCCCAAGAGG
AAGCGTCCTGGCATGAATCCCGCGGTGGCCCGGCCACCTCAACGTCTGTTCAGTGAAGCT
GAAGCTAAAAAGAAACATGGAAAGTACCTTTCTGCCACATCTGGTCTGGGTGGAAAATCT
TGGAGCTACCTAGGAGAGACTTACGTCGACGGTTTCTTAATCAAGGACATGAAGGTACAA
CATTTGATCACCAAGAATGTGAGCCCGCGGCTTGAGGAGGTTACTATGTTTGCCCGAGGC
TCAGAGGACGGCACTGCCAATCTAGATCTTGCGTCCCTCGCGGAAACACTCAAGAACTCC
ACAGCTGAAGACTCTTACCTCCCAGGAGATCCAGTTGAAGTGTTCCGTGGTGAACAACAG
GGCTTGATCGGTCGAACTACTTCTACTCGCGGTGATATCGTTACTCTACAAGTTACCGAA
GGTGACCTTGCGGGACAACACATTGATGCCCCTGTTAAATCTCTCCGTAAACGTTTCAGG
GAGGGTGATCATGTCAAGGTCATCGGTGGTAGCAGATATCAAGATGAGCTGGGTATGGTG
GTCCAAGTCAAGGACGACACCGTGACATTACTTAGCGATATGAGCATGCAAGAGATCACT
GTGTTCAGCAAGGATCTTCGGCTGTCCGCCGAGACAGGTGTTGACGGAAAGCTTGGAATG
TTCGACGTACATGATCTTGTGCAGCTAGACGCCGCTACTGTTGCTTGTATTGTCAAGGTT
GATCGAGAATCTTTGCGGGTTTTGGATCAAAATGGTTCGATTCGCACTATTCTGCCTACT
CAGGTAACAAACAAGATCACACCGCGTCGGGATGCGGTAGCTACGGACCGGAACGGTGCA
GAGATTCGACATGGAGATACCGTTCGCGAAGTGTACGGTGAGCAAAGGAATGGCGTGATC
CTTCACATTCACCGTTCATTTCTGTTCTTGCATAACAAAGCTCAGGCTGAGAACTCCGGT
ATTACTGTCGTGCGTACGACCAACGTTGTAACAGTATCAGCCAAGGGAGGCCGGTCTACG
GGCCCTGATCTTACTAAGATGAACCCGGCTCTGATGAGTCGTGGTGGACCCAGCGGTATG
ATGGGCCCCCCGAAGAGCTTCGGTCGCGACAGGATGATTGGAAAGACAGTCATGGTCCGA
AAGGGGCCCTTCAAAGGTCTTGTGGGTATTGTCAAAGATGCGGGAGACGTGCAGGCACGT
GTGGAGCTCCATTCCAAGAACAAGCTAGTGTCGATTCCCAAGGAGCTCCTCGTGGTCAAG
GACCCTGTAACGGGCCAAACAATCGAAATGGGCCGCGGCAGAGGAGGACCACGCGTCCCT
TCAGCAGCTCCACCATCGGGCTGGCAGGGTGGTCGGACACCGATGGCAGCTGCAGATTCA
TCCAGGACCCCCGCCTGGGGCGGTGCATCTTCCGCGAGAACACCTGCTTGGGCTGGTATG
GGCGGTTCTCGCACACCAGCATGGAAGAACGATGGATCCCGTACATCGAATCCCTACGAT
GGAAGTCGCACCGCATATGGCGGATTCGGCTCACGCACCCCGGCCTGGAACGCTGGCGCC
CGAACTCCCTACGGCGGCTCCGGCTCCGGACAGAGTGACTTCGACGCCTTCGCAGCAGGC
TCTAGAACCCCAGCCTGGAACGCAAACTCCGGCAGTCGCACCCCAGCCTGGTCAGGAGCT
ACGGCAAGCAACGGCAGCAAAGACTCCCGTGGCTACGACGCCCCCACTCCAGGCGGAGCC
TATTCTGCACCCACTCCAGGCGCATATGCCAGCGCTCCAACCCCCGGTGTCTCTGCGCCC
ACGCCTGGAGCCTGGGCCGATAGTGCCCCGACGCCGGGAGCATTCAACGCCCCTACCCCC
GGCGGCCCGTCCAAGAAGCCGTACGACGCGCCTACACCCGCTGCCTGGGACAGTCGTCCA
TATGACGCCCCTACGCCAGCGATGGGTGGAGACGGCGACGATGCAGGACCACGGTACGAA
GACGGAACGCCTAGTCCGTAA
>AO090023000710 RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5
MSRNMLDHDFGSDEEDDDFNPAPAYDSDNEDARPTHQDRDDDDDEEDVKPSRRAERRVGS
EEADDNEDADGHDDEEEDENDDDDEEEEDEDEEGAVSRPKKRRRKGGVAHFFEEEAGVDE
DEDEAEDEEDEMAELGGEMHPDDMDALPVGAETDDRRHRQLDRQRELEASMDAEKQAQLL
KERYGRNRAAASDAVVVPKRLLLPSVEDPSIWGVRCKPGKEREVIFAIQKRIEERPMGSR
NPMKIISAFERGGAMSGYIYVEARRQADVMDALQDMSNVYPRTKMILVPVREMPDLLRVQ
KSEELLPGGWVRIKRGKYQNDLAQIEEVETNGLAVTVRLVPRLDYGMNEDIGAPFMDPKR
KRPGMNPAVARPPQRLFSEAEAKKKHGKYLSATSGLGGKSWSYLGETYVDGFLIKDMKVQ
HLITKNVSPRLEEVTMFARGSEDGTANLDLASLAETLKNSTAEDSYLPGDPVEVFRGEQQ
GLIGRTTSTRGDIVTLQVTEGDLAGQHIDAPVKSLRKRFREGDHVKVIGGSRYQDELGMV
VQVKDDTVTLLSDMSMQEITVFSKDLRLSAETGVDGKLGMFDVHDLVQLDAATVACIVKV
DRESLRVLDQNGSIRTILPTQVTNKITPRRDAVATDRNGAEIRHGDTVREVYGEQRNGVI
LHIHRSFLFLHNKAQAENSGITVVRTTNVVTVSAKGGRSTGPDLTKMNPALMSRGGPSGM
MGPPKSFGRDRMIGKTVMVRKGPFKGLVGIVKDAGDVQARVELHSKNKLVSIPKELLVVK
DPVTGQTIEMGRGRGGPRVPSAAPPSGWQGGRTPMAAADSSRTPAWGGASSARTPAWAGM
GGSRTPAWKNDGSRTSNPYDGSRTAYGGFGSRTPAWNAGARTPYGGSGSGQSDFDAFAAG
SRTPAWNANSGSRTPAWSGATASNGSKDSRGYDAPTPGGAYSAPTPGAYASAPTPGVSAP
TPGAWADSAPTPGAFNAPTPGGPSKKPYDAPTPAAWDSRPYDAPTPAMGGDGDDAGPRYE
DGTPSP
>AO090023000710 with intron
ATGTCACGAAACATGCTGGATCATGACTTCGGTTCAGACGAAGAAGACGATGACTTCAAC
CCCGCTCCCGCATATGATTCAGATAATGAAGATGCCAGGGTCAGTACTACACATGCGTTA
GATGATAGTGGCTGGTGGTGTTAACACGTACGGGGGTTATAG CCGACGCATCAAGACCGG
GACGATGATGACGATGAAGAAGATGTAAAGCCTTCACGACGAGCGGAACGTCGAGTCGGT
AGCGAGGAGGCAGACGATAACGAAGATGCCGATGGCCACGACGACGAGGAAGAAGACGAG
AACGATGATGATGACGAGGAGGAGGAAGATGAAGATGAAGAGGGTGCCGTGTCTGTGAGT
ACTAGCACCATTTGAGCTATTTCTGATACCTCGTGGTTAATACTGACCATTGTTCGTCTT
AATAG CGACCAAAAAAGCGCAGAAGAAAGGGAGGCGTGGCCCATTTCTTCGAGGAAGAGG
CTGGCGTCGATGAAGATGAAGATGAGGCCGAGGACGAAGAGGATGAAATGGCCGAGCTTG
GTGGGGAAATGCATCCAGATGATATGGATGCGCTCCCAGTCGGCGCTGAGACTGACGATC
GTCGCCACCGACAGCTTGATCGCCAGCGCGAGCTTGAGGCCAGCATGGATGCCGAGAAGC
AGGCGCAGTTGCTCAAAGAACGTTACGGACGAAACCGCGCTGCAGCTTCCGATGCAGTCG
TCGTACCAAAGCGGCTACTACTTCCTAGTGTCGAGGATCCTAGCATCTGGGGTGTCCGTT
GTAAGCCCGGCAAAGAACGGGAGGTTATTTTCGCCATCCAGAAACGTATAGAAGAGCGAC
CCATGGGCTCTCGCAACCCTATGAAGATCATATCTGCCTTTGAACGTGGAGGAGCTATGA
GTGGGTACATCTATGTTGAAGCACGCAGGCAAGCGGACGTCATGGATGCACTGCAAGATA
TGTCCAACGTCTACCCACGGACGAAGATGATTCTAGTTCCTGTGCGAGAAATGCCGGACC
TTCTGCGGGTTCAAAAATCCGAAGAACTCTTGCCCGGTGGCTGGGTCCGCATTAAACGTG
GCAAATACCAAAACGATCTGGCCCAGATTGAAGAAGTTGAAACCAACGGTCTCGCTGTGA
CTGTTCGCTTGGTTCCTCGCCTGGATTATGGCATGAACGAGGACATCGGTGCGCCTTTTA
TGGATCCCAAGAGGAAGCGTCCTGGCATGAATCCCGCGGTGGCCCGGCCACCTCAACGTC
TGTTCAGTGAAGCTGAAGCTAAAAAGAAACATGGAAAGTACCTTTCTGCCACATCTGGTC
TGGGTGGAAAATCTTGGAGCTACCTAGGAGAGACTTACGTCGACGGTTTCTTAATCAAGG
ACATGAAGGTACAACATTTGATCACCAAGAATGTGAGCCCGCGGCTTGAGGAGGTTACTA
TGTTTGCCCGAGGCTCAGAGGACGGCACTGCCAATCTAGATCTTGCGTCCCTCGCGGAAA
CACTCAAGAACTCCACAGCTGAAGACTCTTACCTCCCAGGAGATCCAGTTGAAGTGTTCC
GTGGTGAACAACAGGGCTTGATCGGTCGAACTACTTCTACTCGCGGTGATATCGTTACTC
TACAAGTTACCGAAGGTGACCTTGCGGGACAACACATTGATGCCCCTGTTAAATCTCTCC
GTAAACGTTTCAGGGAGGGTGATCATGTCAAGGTCATCGGTGGTAGCAGATATCAAGATG
AGCTGGGTATGGTGGTCCAAGTCAAGGACGACACCGTGACATTACTTAGCGATATGAGCA
TGCAAGAGATCACTGTGTTCAGCAAGGATCTTCGGCTGTCCGCCGAGACAGGTGTTGACG
GAAAGCTTGGAATGTTCGACGTACATGATCTTGTGCAGCTAGAGTGAGTTACTCGGCCCT
ATACTTACTGCTTGTTCTTTTATCTAACTTCTTAATAG CGCCGCTACTGTTGCTTGTATT
GTCAAGGTTGATCGAGAATCTTTGCGGGTTTTGGATCAAAATGGTTCGATTCGCACTATT
CTGCCTACTCAGGTAACAAACAAGATCACACCGCGTCGGGATGCGGTAGCTACGGACCGG
AACGGTGCAGAGATTCGACATGGAGATACCGTTCGCGAAGTGTACGGTGAGCAAAGGAAT
GGCGTGATCCTTCACATTCACCGTTCATTTCTGTTCTTGCATAACAAAGCTCAGGCTGAG
AACTCCGGTATTACTGTCGTGCGTACGACCAACGTTGTAACAGTATCAGCCAAGGGAGGC
CGGTCTACGGGCCCTGATCTTACTAAGATGAACCCGGCTCTGATGAGTCGTGGTGGACCC
AGCGGTATGATGGGCCCCCCGAAGAGCTTCGGTCGCGACAGGATGATTGGAAAGACAGTC
ATGGTCCGAAAGGGGCCCTTCAAAGGTCTTGTGGGTATTGTCAAAGATGCGGGAGACGTG
CAGGCACGTGTGGAGCTCCATTCCAAGAACAAGCTAGTGTCGATTCCCAAGGAGCTCCTC
GTGGTCAAGGACCCTGTAACGGGCCAAACAATCGAAATGGGCCGCGGCAGAGGAGGACCA
CGCGTCCCTTCAGCAGCTCCACCATCGGGCTGGCAGGGTGGTCGGACACCGATGGCAGCT
GCAGATTCATCCAGGACCCCCGCCTGGGGCGGTGCATCTTCCGCGAGAAGTAAGTCTTTC
TATGATTTACGTCTTTGGTCTACGATACTAACAAAGCGATTCAG CACCTGCTTGGGCTGG
TATGGGCGGTTCTCGCACACCAGCATGGAAGAACGATGGATCCCGTACATCGAATCCCTA
CGATGGAAGTCGCACCGCATATGGCGGATTCGGCTCACGCACCCCGGCCTGGAACGCTGG
CGCCCGAACTCCCTACGGCGGCTCCGGCTCCGGACAGAGTGACTTCGACGCCTTCGCAGC
AGGCTCTAGAACCCCAGCCTGGAACGCAAACTCCGGCAGTCGCACCCCAGCCTGGTCAGG
AGCTACGGCAAGCAACGGCAGCAAAGACTCCCGTGGCTACGACGCCCCCACTCCAGGCGG
AGCCTATTCTGCACCCACTCCAGGCGCATATGCCAGCGCTCCAACCCCCGGTGTCTCTGC
GCCCACGCCTGGAGCCTGGGCCGATAGTGCCCCGACGCCGGGAGCATTCAACGCCCCTAC
CCCCGGCGGCCCGTCCAAGAAGCCGTACGACGCGCCTACACCCGCTGCCTGGGACAGTCG
TCCATATGACGCCCCTACGCCAGCGATGGGTGGAGACGGCGACGATGCAGGACCACGGTA
CGAAGACGGAACGCCTAGTCCGTAA
Covered clones
NBRC No.
clone name
start
stop
length(bp)
G07-023-181 B029E06
1,744,523
1,897,955
153,433
G07-023-182 B087B05
1,750,200
1,882,167
131,968
G07-023-187 B043C11
1,758,719
1,880,325
121,607
G07-023-188 B042D08
1,761,451
1,929,768
168,318
G07-023-189 B076H12
1,780,197
1,970,691
190,495
G07-023-190 B001F04
1,786,286
1,983,124
196,839
G07-023-191 B025H08
1,808,287
1,977,652
169,366
G07-023-192 B030F10
1,808,288
1,970,649
162,362
G07-023-193 B077C03
1,834,807
1,970,654
135,848
G07-023-194 B078D07
1,839,351
1,983,125
143,775
G07-023-195 B041C08
1,843,516
1,943,679
100,164
G07-023-196 B074D04
1,847,090
1,995,846
148,757
G07-023-197 B096F05
1,847,123
1,971,846
124,724
G07-023-198 B093H08
1,847,125
1,935,826
88,702
G07-023-199 B052D11
1,854,106
2,024,685
170,580
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at
http://www.nbrc.nite.go.jp/e/mdna-e.html .
open/close all
Sequence