Please make javascript effective. CDS Information : AO090120000482
Genomic map
Information storage and processing [J] Translation, ribosomal structure and biogenesis [A] RNA processing and modification [K] Transcription [L] Replication, recombination and repair [B] Chromatin structure and dynamics Cellular processes and signaling [D] Cell cycle control, cell division, chromosome partitioning [O] Posttranslational modification, protein turnover, chaperones [Y] Nuclear structure [V] Defense mechanisms [T] Signal transduction mechanisms [M] Cell wall/membrane/envelope biogenesis [N] Cell motility [Z] Cytoskeleton [W] Extracellular structures [U] Intracellular trafficking, secretion, and vesicular transport Metabolism [C] Energy production and conversion [G] Carbohydrate transport and metabolism [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism [P] Inorganic ion transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism Poorly characterized [R] General function prediction only [S] Function unknown Bi-functional protein Unannotated
Location
Organism
Aspergillus oryzae RIB40 (= NBRC 100959 )
Replicon
chromosome5
Contig
SC113
Start / Stop / Direction
1,288,450 / 1,287,138 / -
Location
complement(join(1287138..1287438, 1287651..1288450))
Type
CDS
Length
1,101 bp (366 aa)
Intron 1287650..1287439
Annotation
Product
DNA helicase PIF1/RRM3
Gene name
Functional category
Cellular processes and signaling
EC number
Note
KEGG pathway
Sequence feature
References
Computational search results
BLASTPDatabase:UniProtKB:2010_04
HAMAP
No significant hit
InterPro
No significant hit
SignalP
No significant hit
TMHMM
No significant hit
SOSUI
No significant hit
Calculated information (Amino acid sequence)
size of protein
366 amino acids
molecular mass
40,577.67 Da
pI
6.81
aa composition
Ala Val Leu Ile Phe Trp Pro Met Gly Ser 7.4 5.5 7.7 4.9 4.6 1.1 9.3 1.4 4.6 9.3 Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 7.1 0.3 4.1 5.2 1.4 6.6 2.5 4.9 6 6.3
Sequence
>AO090120000482 DNA helicase PIF1/RRM3
ATGGCCAATGCCAGCGGATCTGCCTTAGGGTCTTTGCACAGCGCCGTATACTTCGATGAG
AATGATTTCGATGATGATCTCGATTTGGATAGCGAAGAGTCAGAACCAGTTATACCACCG
CCAAAAATTGTGAGGCCGAATAATGAGCAACAGATACCATTTCACGGTACAAACCCAACT
ACCTTGGCGACGCATACGAACAAGCCGGCTCAAGTATCAACGCCTGCGATGAAGAATGAC
GACTTGGAGATAAAATACCCTGAGTTGCCTCCAATTCCTGACGATGATCCGGTGCCATCC
AGCAGTATACCAGTTCCTTGGTCCTCATCACCACCCTCTCACTTTCAGAAACCTACCAGT
TCACGAACTCTGCCGTGGCTTAAGAAAGAGGAGCCGACGCCAGCAGTACAGTACAAGAAG
CCAGAAACGCCTGTGCGCTCTAAATCTACTGCCATATGGAACAAATCGGCGAGCGCAATC
AAGGAGGAACAAAAGGAACTACGCCGACAGTATAAGAGTCAGAAGTCCGAATCTGTGCAA
CATCGCCCACGTGCTAAGATAGCGCCTTTATTTCTCAGTGATGAACAAAAGCACGTACTT
AATGCCGTTGTTGAACAAGGGAAGAGTATATTCTTCACCGGTTCCGCCGGAACTGGAAAA
TCAGTTCTTATGAGAGAAATCATAAAGAAACTTCGCGACAAATACAGGAGAGAACCTGAC
AGAGTGGCAGTGACTGCTTCGACGGGTCTTGCTGCTTGTAACATCGAGGGTGTCACCCTC
CATAGCTTCGCAGGTATAGGAAACAACGGCCGTCCTTTCGGCGGTATTCAGCTTGTCGTC
ACTGGAGACTTCTTCCAATTGCCTCCGGTCCCTGATGGCAGTACTCGAGAGGCGAAGTTT
GCGTTCTCTGCTGCTACCTGGAACACCTCTATACAGCACACAATCCTCTTGACCACCGTT
TTCCGTCAAGCAGACCCGGATTTTGCCAACATGCTCAATGAAATGAGACTTGGAAAGCTC
AGTCAGCGGACAATCGATACCTTTCAACAACTACAACGGCCACTTGACTTTCATGATTCT
CTTGAAGCTACGGAGCTGTAA
>AO090120000482 DNA helicase PIF1/RRM3
MANASGSALGSLHSAVYFDENDFDDDLDLDSEESEPVIPPPKIVRPNNEQQIPFHGTNPT
TLATHTNKPAQVSTPAMKNDDLEIKYPELPPIPDDDPVPSSSIPVPWSSSPPSHFQKPTS
SRTLPWLKKEEPTPAVQYKKPETPVRSKSTAIWNKSASAIKEEQKELRRQYKSQKSESVQ
HRPRAKIAPLFLSDEQKHVLNAVVEQGKSIFFTGSAGTGKSVLMREIIKKLRDKYRREPD
RVAVTASTGLAACNIEGVTLHSFAGIGNNGRPFGGIQLVVTGDFFQLPPVPDGSTREAKF
AFSAATWNTSIQHTILLTTVFRQADPDFANMLNEMRLGKLSQRTIDTFQQLQRPLDFHDS
LEATEL
>AO090120000482 with intron
ATGGCCAATGCCAGCGGATCTGCCTTAGGGTCTTTGCACAGCGCCGTATACTTCGATGAG
AATGATTTCGATGATGATCTCGATTTGGATAGCGAAGAGTCAGAACCAGTTATACCACCG
CCAAAAATTGTGAGGCCGAATAATGAGCAACAGATACCATTTCACGGTACAAACCCAACT
ACCTTGGCGACGCATACGAACAAGCCGGCTCAAGTATCAACGCCTGCGATGAAGAATGAC
GACTTGGAGATAAAATACCCTGAGTTGCCTCCAATTCCTGACGATGATCCGGTGCCATCC
AGCAGTATACCAGTTCCTTGGTCCTCATCACCACCCTCTCACTTTCAGAAACCTACCAGT
TCACGAACTCTGCCGTGGCTTAAGAAAGAGGAGCCGACGCCAGCAGTACAGTACAAGAAG
CCAGAAACGCCTGTGCGCTCTAAATCTACTGCCATATGGAACAAATCGGCGAGCGCAATC
AAGGAGGAACAAAAGGAACTACGCCGACAGTATAAGAGTCAGAAGTCCGAATCTGTGCAA
CATCGCCCACGTGCTAAGATAGCGCCTTTATTTCTCAGTGATGAACAAAAGCACGTACTT
AATGCCGTTGTTGAACAAGGGAAGAGTATATTCTTCACCGGTTCCGCCGGAACTGGAAAA
TCAGTTCTTATGAGAGAAATCATAAAGAAACTTCGCGACAAATACAGGAGAGAACCTGAC
AGAGTGGCAGTGACTGCTTCGACGGGTCTTGCTGCTTGTAACATCGAGGGTGTCACCCTC
CATAGCTTCGCAGGTATAGGGTTAGGCAAAGAGCCTGTTCCTGAGCTTGTTAAGAAGGTC
ACAATCTGCATCAACCCTTATAGGAAGGTACCTATATTGACGCATCACAGGTCAAGAGAA
ATCCCAAGGGCCGGAACCGTTGGCTACGTACAAAAGTTCTGATTATTGATGAAGTATCCA
TGGTTGATGGAGACCTCTTTGACAAGCTCGAGGAACTTGCTCGACGGATTAG AAACAACG
GCCGTCCTTTCGGCGGTATTCAGCTTGTCGTCACTGGAGACTTCTTCCAATTGCCTCCGG
TCCCTGATGGCAGTACTCGAGAGGCGAAGTTTGCGTTCTCTGCTGCTACCTGGAACACCT
CTATACAGCACACAATCCTCTTGACCACCGTTTTCCGTCAAGCAGACCCGGATTTTGCCA
ACATGCTCAATGAAATGAGACTTGGAAAGCTCAGTCAGCGGACAATCGATACCTTTCAAC
AACTACAACGGCCACTTGACTTTCATGATTCTCTTGAAGCTACGGAGCTGTAA
Covered clones
NBRC No.
clone name
start
stop
length(bp)
G07-113-128 B018B11
1,155,832
1,344,273
188,442
G07-113-129 B030F05
1,166,684
1,342,629
175,946
G07-113-136 B025G08
1,271,793
1,338,713
66,921
G07-113-137 B072B03
1,275,366
1,348,063
72,698
G07-113-138 B080B08
1,282,780
1,338,713
55,934
Distribution of Our Microbial Genomic DNA clones
We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at
http://www.nbrc.nite.go.jp/e/mdna-e.html .
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Sequence