CDS Information : APA32_02730

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Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190)
Replicon	chromosome
Start / Stop / Direction	284,479 / 283,472 / -
Location	complement(283472..284479)
Type	CDS
Length	1,008 bp (335 aa)

Product	Beta-Ig-H3/fasciclin repeat containing protein
Gene name
Functional category	Cellular Function - Cell formation
EC number
Note	Chromosome variant locus=AP-TR01 (13 repeats), Integrins and glycosaminoglycans binding protein Contains hyper-mutable tandem repeats AP-TR01. The repetitive number in the IFO 3283-01 is 14, other strains are 13.
KEGG pathway
Sequence feature	279..304 (a.a.) REPEAT
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=1e-35 A9H6F2_GLUDA Putative cell adhesion Alignment 2 E=3e-35 B5ZIN3_GLUDA Beta-Ig-H3/fasciclin Alignment 3 E=8e-25 Q5FUD3_GLUOX Putative uncharacterized protein Alignment 4 E=4e-13 Q1NAG6_9SPHN Putative uncharacterized protein Alignment 5 E=2e-12 Q39PI9_BURS3 Beta-Ig-H3/fasciclin repeat containing protein Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR000782 Beta-Ig-H3/fasciclin (Domain) SSF82153   FAS1 domain PF02469   Fasciclin PS50213   FAS1
SignalP	Bacteria, Gram-negative
TMHMM	Transmembrane 1
SOSUI	No significant hit

size of protein	335 amino acids
molecular mass	35,202.76 Da
pI	8.75
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 15.2 (51aa) 5.7 (19aa) 8.7 (29aa) 3.6 (12aa) 2.1 (7aa) 1.2 (4aa) 8.1 (27aa) 1.8 (6aa) 6 (20aa) 8.1 (27aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 10.7 (36aa) 0.9 (3aa) 3.6 (12aa) 9.6 (32aa) 3 (10aa) 3 (10aa) 0.9 (3aa) 3 (10aa) 3 (10aa) 2.1 (7aa)

>APA32_02730 Beta-Ig-H3/fasciclin repeat containing protein
ATGATCTTTTGGGAGACATCCATGCACTCTAAGCGTGTTCTGTACAGAACAGCCTTTACC
TCACGTGCGCTTGCACCCGCAGCCATAGGCATTGCAGCCTTGGTGCTTGGCGGCTGTACG
CAAAGCCGCGCACGGCAGGATACGTATAAAGTTGCCAATTCAACCTGTTCATACATGATG
CCAACAGTTTCGGGCACACGCACGTACGTACCCACCCAACAAAGCCAGAACTTTGCTGGG
GCCGAACCAAAAGGTGCCCCAGATAGCAAGATTGCCTATCCCAACCCGGAAACACCGGCT
TTTTGCGACCGTCCTTTGTCAGACACGCTTCCGAGTTCTCTGGAAATGGCAGATTACACC
CATTTGCTCACGGCAACCGGGCTGCTTGCCATTCTCCAGCAAGATGGACCGTTTACAGTT
TTCGGTATCCCGAATTCCGCGCTGGAAACCTATGATGCCCAGACAGGCAACAAGCTGACA
AGCCCGGACAATACGGCAGTTATCAAGGAAATACTGTCTTACACCATTGTAAAAGGGCGG
TGGCCTCTGGCCAAAATCAAGCAGGCGGCTCTGGCCTCCCCCACCCAATCGGTCGGGTTG
CCTACCCTGAATGGCCAGTTGCTTTCAGCGTGGGTGGATGGGCCGTCTGGCCAAGTGGTT
ATTGGCAACGGACAAGGCATGACATCCCACCTATGGGTTACGGGAATTCCGCAATCTAAC
GGTGTGCTTTACTTCACGCAGGATCTTGTTCTTCCACCTGTTGCGCAACAAAACGCAGCT
ACCAGCACATCTGCTTCTGCGGCTTCTGTAACCCCTGCAAACCCACTACCCACTGCACAG
GCACAGGCACAGGCACAGGCACAGGCACAGGCACAGGCACAGGCACAGGCACAGGCACAG
GCACAGGCACAGGCCAGCACGGTGGCCGCACGCACGCAACCGGCTACAGCCACCTACACC
TCTCGCAAGGAAAACCTTGCAACGCCGCCTGTTTTACAACTGCCCTGA


>APA32_02730 Beta-Ig-H3/fasciclin repeat containing protein
MIFWETSMHSKRVLYRTAFTSRALAPAAIGIAALVLGGCTQSRARQDTYKVANSTCSYMM
PTVSGTRTYVPTQQSQNFAGAEPKGAPDSKIAYPNPETPAFCDRPLSDTLPSSLEMADYT
HLLTATGLLAILQQDGPFTVFGIPNSALETYDAQTGNKLTSPDNTAVIKEILSYTIVKGR
WPLAKIKQAALASPTQSVGLPTLNGQLLSAWVDGPSGQVVIGNGQGMTSHLWVTGIPQSN
GVLYFTQDLVLPPVAQQNAATSTSASAASVTPANPLPTAQAQAQAQAQAQAQAQAQAQAQ
AQAQASTVAARTQPATATYTSRKENLATPPVLQLP

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.