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CDS Information : APA32_06250

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close this sectionGenomic map

Display Clone

Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190)
Replicon chromosome
Start / Stop / Direction 649,821 / 648,601 / -
Location complement(648601..649821)
Type CDS
Length 1,221 bp (406 aa)

close this sectionAnnotation

Product Isocitrate dehydrogenase
Gene name
Functional category Metabolic
EC number
Note NADP-dependent
KEGG pathway map:00020 KO:K00031
map:00480 KO:K00031
map:00720 KO:K00031
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:15.0
1E=0A9HBR3_GLUDAIsocitrate dehydrogenase [NADP]Alignment
2E=0B5ZGJ2_GLUDAIsocitrate dehydrogenase, NADP-dependentAlignment
3E=0A5FW07_ACICJIsocitrate dehydrogenase (NADP)Alignment
4E=0Q0BSD8_GRABCIsocitrate dehydrogenase (NADP)Alignment
5E=0Q47LS1_THEFYIsocitrate dehydrogenase (NADP)Alignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001804 Isocitrate/isopropylmalate dehydrogenase (Family)
 [270-289]  PS00470
PS00470   IDH_IMDH
 [3-406]  3.1e-151 G3DSA:3.40.718.10
G3DSA:3.40.718.10   no description
 [5-395]  1.1e-68 PF00180
PF00180   Iso_dh
IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic (Family)
 [2-405]  2.3e-215 TIGR00127
TIGR00127   nadp_idh_euk: isocitrate dehydrogenase, NAD
 [1-406]  1.2e-296 PTHR11822
PTHR11822   NADP-SPECIFIC ISOCITRATE DEHYDROGENASE
 [1-406]  6.2e-286 PIRSF000108
PIRSF000108   Isocitrate dehydrogenase (NADP)
IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site (Conserved_site)
 [270-289]  PS00470
PS00470   IDH_IMDH
IPR024084 Isopropylmalate dehydrogenase-like domain (Domain)
 [3-406]  3.1e-151 G3DSA:3.40.718.10
G3DSA:3.40.718.10   no description
 [5-395]  1.1e-68 PF00180
PF00180   Iso_dh
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 406 amino acids
molecular mass 45,449.09 Da
pI 6.86
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.6
(31aa)
7.9
(32aa)
7.9
(32aa)
6.2
(25aa)
3.7
(15aa)
1.7
(7aa)
4.9
(20aa)
2.2
(9aa)
8.6
(35aa)
3
(12aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
6.9
(28aa)
1.2
(5aa)
3
(12aa)
1.5
(6aa)
3.9
(16aa)
7.9
(32aa)
2.5
(10aa)
5.4
(22aa)
7.6
(31aa)
6.4
(26aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G15-001-031 AS1FE12L00001F06 617,995 650,472 32,478
G15-001-032 AS1FE12L00005C06 638,236 672,980 34,745

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.