CDS Information : APA32_06250

Display	1000bp 10000bp 100000bp Clone

Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190)
Replicon	chromosome
Start / Stop / Direction	649,821 / 648,601 / -
Location	complement(648601..649821)
Type	CDS
Length	1,221 bp (406 aa)

Product	Isocitrate dehydrogenase
Gene name
Functional category	Metabolic
EC number
Note	NADP-dependent
KEGG pathway	map:00020 KO:K00031 map:00480 KO:K00031 map:00720 KO:K00031
Sequence feature
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=0 A9HBR3_GLUDA Isocitrate dehydrogenase [NADP] Alignment 2 E=0 B5ZGJ2_GLUDA Isocitrate dehydrogenase, NADP-dependent Alignment 3 E=0 A5FW07_ACICJ Isocitrate dehydrogenase (NADP) Alignment 4 E=0 Q0BSD8_GRABC Isocitrate dehydrogenase (NADP) Alignment 5 E=0 Q47LS1_THEFY Isocitrate dehydrogenase (NADP) Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001804 Isocitrate/isopropylmalate dehydrogenase (Family) PS00470   IDH_IMDH G3DSA:3.40.718.10   no description PF00180   Iso_dh IPR004790 Isocitrate dehydrogenase NADP-dependent, eukaryotic (Family) TIGR00127   nadp_idh_euk: isocitrate dehydrogenase, NAD PTHR11822   NADP-SPECIFIC ISOCITRATE DEHYDROGENASE PIRSF000108   Isocitrate dehydrogenase (NADP) IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site (Conserved_site) PS00470   IDH_IMDH IPR024084 Isopropylmalate dehydrogenase-like domain (Domain) G3DSA:3.40.718.10   no description PF00180   Iso_dh
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	406 amino acids
molecular mass	45,449.09 Da
pI	6.86
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 7.6 (31aa) 7.9 (32aa) 7.9 (32aa) 6.2 (25aa) 3.7 (15aa) 1.7 (7aa) 4.9 (20aa) 2.2 (9aa) 8.6 (35aa) 3 (12aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.9 (28aa) 1.2 (5aa) 3 (12aa) 1.5 (6aa) 3.9 (16aa) 7.9 (32aa) 2.5 (10aa) 5.4 (22aa) 7.6 (31aa) 6.4 (26aa)

>APA32_06250 Isocitrate dehydrogenase
ATGGCTAAAATCAAGGTCAAGAACCCGGTGGTGGAAATGGACGGGGATGAAATGACCCGT
ATCATCTGGCACTTCATTCGTGAGCGCCTGATTCTGCCCTATCTGGATATTGACCTGAAA
TATTACGATCTGGGCATAGAAAACCGCGATGCCACGGATGACAAGGTGACCGTAGAAGCC
GCAGAAGCCACCAAACGCTACGGCGTGGCTGTAAAATGCGCCACCATCACCCCCGATGAA
GCACGGGTGAAGGAATTTGGGCTGAAAAAGATGTGGCGTTCACCCAACGGCACCATCCGC
AACATTCTGGATGGCACCATCTTTCGTGAACCCATCATCTGTTCCAACGTGCCACGCCTT
GTGCCGCACTGGACAAAGCCCATCGTGATTGGTCGCCATGCCTATGGGGATATCTACCGC
GCTGCGGAAACCAAGATCCCCGGCCCCGGCAAGGTGACGCTCAACTACATTCCCGAAGAT
GGCGGTGAGCCCATTACGCTGGATGTGCATGACTTCAAAGGCCCGGGCGTGGCGCTGGGC
ATGCACAACACCCGCGCATCTATCGAAGGCTTTGCCCGTGCATCCTTCTCCTACGGGCGG
GACCGCAAGCTGCCGGTGTATCTGTCCACCAAGAACACCATCCTGAAAGCCTATGATGGC
ATGTTCAAGGATGTGTTTCAGGAGGTGTACGAAAAGGAATTCAAGGCCGAGTTTGAAAAG
CTGGGCCTGACCTACGAACACCGCCTGATTGATGACATGGTGGCCTGCGCCCTTAAATGG
CCGGGTGGCTACGTATGGGCCTGCAAAAACTACGATGGCGATGTGGAAAGCGACATTGTG
GCACAGGGCTTTGGCAGCCTTGGGTTGATGACATCCGTGCTGCTCAGCCCCAAGGGCGAT
GTGGTGGAAGCCGAAGCCGCGCATGGCACCGTCACCCGCCATTACCGTGAGCACCAGAAA
GGCAAGCCCACCAGCACCAACCCCATTGCCTCCATTTTTGCATGGACACGTGGGCTGGCT
TATCGCGGCCGCTTTGATGATACGCCAGACGTTGTGCACTTTGCCAACACGCTGGAAAAA
GTGTGCGTAGATACCGTGGAAGGCGGGCAGATGACCAAGGATCTGGCGCTACTGGTGGGC
AACGGCACCAAATGGCTGGACACGCAGCCCTTCCTTGATGTGCTGGATGAAAAACTCAAG
CAGGCCTTGGCCAAGGGCTGA


>APA32_06250 Isocitrate dehydrogenase
MAKIKVKNPVVEMDGDEMTRIIWHFIRERLILPYLDIDLKYYDLGIENRDATDDKVTVEA
AEATKRYGVAVKCATITPDEARVKEFGLKKMWRSPNGTIRNILDGTIFREPIICSNVPRL
VPHWTKPIVIGRHAYGDIYRAAETKIPGPGKVTLNYIPEDGGEPITLDVHDFKGPGVALG
MHNTRASIEGFARASFSYGRDRKLPVYLSTKNTILKAYDGMFKDVFQEVYEKEFKAEFEK
LGLTYEHRLIDDMVACALKWPGGYVWACKNYDGDVESDIVAQGFGSLGLMTSVLLSPKGD
VVEAEAAHGTVTRHYREHQKGKPTSTNPIASIFAWTRGLAYRGRFDDTPDVVHFANTLEK
VCVDTVEGGQMTKDLALLVGNGTKWLDTQPFLDVLDEKLKQALAKG

NBRC No.	clone name	start	stop	length(bp)
G15-001-031	AS1FE12L00001F06	617,995	650,472	32,478
G15-001-032	AS1FE12L00005C06	638,236	672,980	34,745

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.