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CDS Information : APA32_09850

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close this sectionGenomic map

Display Clone

Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190)
Replicon chromosome
Start / Stop / Direction 1,028,639 / 1,027,443 / -
Location complement(1027443..1028639)
Type CDS
Length 1,197 bp (398 aa)

close this sectionAnnotation

Product Threonine dehydratase
Gene name
Functional category Metabolic
EC number
Note
KEGG pathway map:00260 KO:K01754
map:00290 KO:K01754
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:15.0
1E=1e-166B5ZIW9_GLUDAThreonine dehydrataseAlignment
2E=1e-164A9H381_GLUDAPutative threonine dehydratase catabolicAlignment
3E=1e-140Q5FU38_GLUOXThreonine dehydrataseAlignment
4E=1e-133Q0BPR4_GRABCThreonine dehydrataseAlignment
5E=1e-132A5FWZ6_ACICJL-threonine ammonia-lyaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit (Domain)
 [4-352]  8.8e-91 SSF53686
SSF53686   Tryptophan synthase beta subunit-like PLP-dependent enzymes
 [14-302]  2.4e-58 PF00291
PF00291   PALP
IPR002912 Amino acid-binding ACT (Domain)
 [324-390]  5.2e-06 PF01842
PF01842   ACT
IPR005789 Threonine dehydratase II (Family)
 [21-397]  1e-128 TIGR01127
TIGR01127   ilvA_1Cterm: threonine dehydratase
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 398 amino acids
molecular mass 41,907.36 Da
pI 6.53
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.8
(59aa)
7.8
(31aa)
10.1
(40aa)
7.8
(31aa)
2.5
(10aa)
0.3
(1aa)
4.5
(18aa)
2.3
(9aa)
9.8
(39aa)
4.8
(19aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(18aa)
0.8
(3aa)
2.5
(10aa)
3.8
(15aa)
1
(4aa)
3.3
(13aa)
1.5
(6aa)
7
(28aa)
4.8
(19aa)
6.3
(25aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G15-001-050 AS1FE12L00001B01 1,010,089 1,042,808 32,720

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.