CDS Information : APA32_09850

Display	1000bp 10000bp 100000bp Clone

Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190)
Replicon	chromosome
Start / Stop / Direction	1,028,639 / 1,027,443 / -
Location	complement(1027443..1028639)
Type	CDS
Length	1,197 bp (398 aa)

Product	Threonine dehydratase
Gene name
Functional category	Metabolic
EC number
Note
KEGG pathway	map:00260 KO:K01754 map:00290 KO:K01754
Sequence feature
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=1e-166 B5ZIW9_GLUDA Threonine dehydratase Alignment 2 E=1e-164 A9H381_GLUDA Putative threonine dehydratase catabolic Alignment 3 E=1e-140 Q5FU38_GLUOX Threonine dehydratase Alignment 4 E=1e-133 Q0BPR4_GRABC Threonine dehydratase Alignment 5 E=1e-132 A5FWZ6_ACICJ L-threonine ammonia-lyase Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR001926 Pyridoxal phosphate-dependent enzyme, beta subunit (Domain) SSF53686   Tryptophan synthase beta subunit-like PLP-dependent enzymes PF00291   PALP IPR002912 Amino acid-binding ACT (Domain) PF01842   ACT IPR005789 Threonine dehydratase II (Family) TIGR01127   ilvA_1Cterm: threonine dehydratase
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	398 amino acids
molecular mass	41,907.36 Da
pI	6.53
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 14.8 (59aa) 7.8 (31aa) 10.1 (40aa) 7.8 (31aa) 2.5 (10aa) 0.3 (1aa) 4.5 (18aa) 2.3 (9aa) 9.8 (39aa) 4.8 (19aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.5 (18aa) 0.8 (3aa) 2.5 (10aa) 3.8 (15aa) 1 (4aa) 3.3 (13aa) 1.5 (6aa) 7 (28aa) 4.8 (19aa) 6.3 (25aa)

>APA32_09850 Threonine dehydratase
ATGATCACGTTTGAGGACGTCACAGCTGCGGCAGATCGCATCCGTGGCAATGTGATCCGC
ACGCCCACCATTGCTTCCCACGCGCTTTCCAAGGCAACCGGGGCCGATATTACCCTTAAG
CTTGAAAATCTTCAGGCGGTCGGGTCGTTCAAGGAGCGTGGTGCCGCCAACAAGCTGGCA
CTGCTAACCCCCGAAGAACGCAGCCGTGGTGTGATTGCCGTATCCGCTGGCAACCATGCG
CAGGGTGTGGCCCGCCATGCCAGCCTGCTGGGTATTGATGCCGTTATTGTCATGCCCAAG
TTTACGCCGGCAGGCAAAGTGGTGCGTACCCGCAACTGGGGGGCCCGTGTTATTCTGGAA
GGCGAAAGCTTTGCAGAAGCCCTGATGTTTGCAGAAGACCTGCAAGCGCGTGAAGGCCGC
ACCTTTATCCACCCGTATGATGATCCCGCAGTTATGGCGGGCCAAGGCACCTGCGCGCTG
GAGCTTTTTCAGGATGCTGGGCCGCTGGATGCGCTGGTGGTGCCTATTGGTGGCGGTGGT
CTGCTTTCTGGCTGCGCCGTGGCGGCCCGCGCCATGCGCCCGGATATCAAGCTGATTGGC
GTGCAGGTGGAAAAGTATGATTCCCTGTGTGCCTTCCCCGGCCCAGCCACGCGCCCCAAT
GGTGGCGCCACCATTGCAGAAGGTATTGCCGTTCTGCAAATTGGCCGCCAGACGGATGAA
GTTATCCGCCAACTGGTTGATCAGGTTCTGGTTGTTTCTGAATCCGCTATTGAAAACGCC
ATTACCCTGCTGGCTGAAGGTGCCAAGCAGGTAAGTGAAGGCGCAGGCGCTGCCGGGCTT
GCTGCCCTGCTAACCTACCCGGATATGTTCCGCGGTAAAAAGGTTGCCCTGCCTGTTTCC
GGCGGAAACATTGATAGCCGTATTCTGGCCAACACTCTGCTGCGCGCCATGCTGCGTGAT
GGCCGCATTTTGCGCCTGATTATGGAAATTCCAGACCGCCCCGGTGTTCTGGCCGATATT
TCCAAAAGCATTGGGGAAGCTGGCGGCAATATTATCGAAGTTTCGCACCAGCGCCTGTTC
GCAGCACCTTCCGTGCAGGCAGCGCAGTTGGAAGTGATGATAGAAGCGCGAGACCCAGAA
CACGCTGCCCTTATCACGCAGGAACTGGGTAAATCCTACATTGTGCGCCGCGCCTGA


>APA32_09850 Threonine dehydratase
MITFEDVTAAADRIRGNVIRTPTIASHALSKATGADITLKLENLQAVGSFKERGAANKLA
LLTPEERSRGVIAVSAGNHAQGVARHASLLGIDAVIVMPKFTPAGKVVRTRNWGARVILE
GESFAEALMFAEDLQAREGRTFIHPYDDPAVMAGQGTCALELFQDAGPLDALVVPIGGGG
LLSGCAVAARAMRPDIKLIGVQVEKYDSLCAFPGPATRPNGGATIAEGIAVLQIGRQTDE
VIRQLVDQVLVVSESAIENAITLLAEGAKQVSEGAGAAGLAALLTYPDMFRGKKVALPVS
GGNIDSRILANTLLRAMLRDGRILRLIMEIPDRPGVLADISKSIGEAGGNIIEVSHQRLF
AAPSVQAAQLEVMIEARDPEHAALITQELGKSYIVRRA

NBRC No.	clone name	start	stop	length(bp)
G15-001-050	AS1FE12L00001B01	1,010,089	1,042,808	32,720

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.