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CDS Information : APA32_19020

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Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190) chromosome

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Overview 
Genome

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Organism Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190)
Replicon chromosome
Start / Stop / Direction 2,068,824 / 2,069,762 / +
Location 2068824..2069762
Type CDS
Length 939 bp (312 aa)

close this sectionAnnotation

Product D-alanine--D-alanine ligase
Gene name
Functional category Metabolic
EC number
Note
KEGG pathway map:00473 KO:K01921
map:00550 KO:K01921
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:15.0
1E=1e-115A9H0J6_GLUDAUDP-N-acetylenolpyruvoylglucosamine reductaseAlignment
2E=1e-115B5ZJU5_GLUDAD-alanine/D-alanine ligaseAlignment
3E=1e-107DDL_GLUOXD-alanine--D-alanine ligase
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Alignment
4E=1e-106DDL_GRABCD-alanine--D-alanine ligase
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Alignment
5E=1e-101DDL_ACICJD-alanine--D-alanine ligase
D-alanylalanine synthetase
D-Ala-D-Ala ligase
Alignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site (Conserved_site)
 [247-279]  PS00844
PS00844   DALA_DALA_LIGASE_2
 [68-79]  PS00843
PS00843   DALA_DALA_LIGASE_1
IPR000291 D-alanine--D-alanine ligase/VANA/B/C (Family)
 [68-79]  PS00843
PS00843   DALA_DALA_LIGASE_1
 [247-279]  PS00844
PS00844   DALA_DALA_LIGASE_2
IPR005905 D-alanine--D-alanine ligase (Family)
 [6-309]  4.1e-97 TIGR01205
TIGR01205   D_ala_D_alaTIGR: D-alanine--D-alanine ligas
 [50-308]  7.9e-58 PTHR23132
PTHR23132   D-ALANINE--D-ALANINE LIGASE
IPR011095 D-alanine--D-alanine ligase, C-terminal (Domain)
 [101-306]  1.6e-46 PF07478
PF07478   Dala_Dala_lig_C
IPR011127 D-alanine--D-alanine ligase, N-terminal (Domain)
 [5-100]  7.6e-41 PF01820
PF01820   Dala_Dala_lig_N
IPR011761 ATP-grasp fold (Domain)
 [106-306]  44.514 PS50975
PS50975   ATP_GRASP
IPR013816 ATP-grasp fold, subdomain 2 (Domain)
 [154-309]  8.5e-42 G3DSA:3.30.470.20
G3DSA:3.30.470.20   no description
IPR013817 Pre-ATP-grasp fold (Domain)
 [3-89]  2.9e-23 G3DSA:3.40.50.20
G3DSA:3.40.50.20   no description
IPR016185 PreATP-grasp-like fold (Domain)
 [3-101]  6.4e-30 SSF52440
SSF52440   PreATP-grasp domain
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 312 amino acids
molecular mass 32,944.36 Da
pI 4.84
aa composition
AlaValLeuIlePheTrpProMetGlySer
12.5
(39aa)
8.7
(27aa)
8.7
(27aa)
4.8
(15aa)
1.9
(6aa)
1
(3aa)
5.4
(17aa)
2.6
(8aa)
9
(28aa)
6.4
(20aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
7.4
(23aa)
1.9
(6aa)
2.6
(8aa)
4.5
(14aa)
2.9
(9aa)
2.9
(9aa)
2.2
(7aa)
4.2
(13aa)
6.4
(20aa)
4.2
(13aa)

open this sectionSequence