CDS Information : APA32_20310

Display	1000bp 10000bp 100000bp Clone

Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190) chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190)
Replicon	chromosome
Start / Stop / Direction	2,209,551 / 2,210,564 / +
Location	2209551..2210564
Type	CDS
Length	1,014 bp (337 aa)

Product	DNA polymerase III exonuclease epsilon subunit like protein
Gene name
Functional category	Information Pathways - Replication
EC number
Note	Chromosome variant locus=AP-TR06 (8 repeats) Contains hyper-mutable tandem repeats AP-TR06. The repetitive number in the IFO 3283-01 is 10, and others are 8.
KEGG pathway
Sequence feature	54..77 (a.a.) REPEAT
References

BLASTP Database:UniProtKB:15.0 show BLAST table	1 E=6e-23 A9MBR3_BRUC2 Exonuclease, RNase T and DNA polymerase III Alignment 2 E=6e-23 A5VUV4_BRUO2 Putative exonuclease Alignment 3 E=6e-23 B2SB34_BRUA1 DNA polymerase III, epsilon subunit Alignment 4 E=6e-23 Q2YKP0_BRUA2 DNA polymerase III, epsilon subunit:Exonuclease Alignment 5 E=6e-23 Q8YC82_BRUME DNA POLYMERASE III, EPSILON CHAIN Alignment
HAMAP	No significant hit
InterPro Database:interpro:18.0	IPR006055 Exonuclease (Domain) SM00479   no description IPR012337 Polynucleotidyl transferase, Ribonuclease H fold (Domain) SSF53098   Ribonuclease H-like IPR013520 Exonuclease, RNase T and DNA polymerase III (Domain) PF00929   Exonuc_X-T
SignalP	No significant hit
TMHMM	Transmembrane 2
SOSUI	No significant hit

size of protein	337 amino acids
molecular mass	39,004.57 Da
pI	9.08
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 3.6 (12aa) 5.6 (19aa) 8.9 (30aa) 11 (37aa) 5.3 (18aa) 0.9 (3aa) 3.6 (12aa) 3.3 (11aa) 4.2 (14aa) 6.8 (23aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3 (10aa) 1.8 (6aa) 6.2 (21aa) 2.1 (7aa) 2.7 (9aa) 11.3 (38aa) 3 (10aa) 3.9 (13aa) 6.2 (21aa) 6.8 (23aa)

>APA32_20310 DNA polymerase III exonuclease epsilon subunit like protein
ATGATTATTTTTATTACTTTTATTTTCATATCATCCTCAATAAATGCCTTTTTAGCATAC
CGCCTAAATAGAAGTATTACTCAGTGGATACTCGCTGGAATAATATTTCCATTTTTTTCA
TTCGTATTGTTGTGGTCTTTACCTAAAAGAGGAGAAAGCAAGGTCGATAAGGTCGATAAG
GTCGATAAGGTCGATAAGGTCGATAAGGTCGATAAGGTCGATAAGGTCGATGGTAATCTG
CCTCAGAAAGAATCTGAACACATTTTAGAGAATATTAGGAAAAATAAAGTGGAAAATGAA
AAACTAATCGAAATTGCCAATAGAATAAGAGAGGAAAAAATATCGAAAAACAAACTTTAT
ATAAAAGGGAAAAATAAACCTTTATTTGTTGATGTTGAAACAACTGGTCTTCATAGTGAT
GATCAAATTGTTAGCATATGTATGATTTTATTATATGCCGATAAAAGCCAAGAACTGCAA
AAGCTAACATATAAAAGTTTATATTATATATTTGACCCTTGTAAAAAAAGTCATCCTATA
GCTGAAGGTATACATGGATATAATGACTGGACATTAAGGCATCAAAATTTATTTGAAGAA
AAAATGGAGCATATATTATCTTTCATAGAAGAAAGTGATGTTATAGTTGCGCATAATGTC
AATTTTGACATGAAATTCATCCGAAATTCTTTCGCAAACGCTAAAATAGATATCGGTAAG
ATTGGTACAATGTGCACAATGGAAATGCATGGAGGTAGCTTATCTGCATGCTCTAAAAGA
TTGGGAATACAAAGAAAAACATCAATTCATGATGCAGCTGAAGATGTTCTCATGTGTATG
TGTCTATATTTGGAAAAGATGAGCAATATTAATGTTTTAGATATGTACCATAGCTTTACT
CTTCCAAAGCTGAAAAATTTTATTGAACCGCCTCCCGTTCCAGATGGAAAACTTCCCCGT
AGAAATAATATCAAAAAACGTAATGAAATTTTAGGAGAAAAATTTATTAAATAA


>APA32_20310 DNA polymerase III exonuclease epsilon subunit like protein
MIIFITFIFISSSINAFLAYRLNRSITQWILAGIIFPFFSFVLLWSLPKRGESKVDKVDK
VDKVDKVDKVDKVDKVDGNLPQKESEHILENIRKNKVENEKLIEIANRIREEKISKNKLY
IKGKNKPLFVDVETTGLHSDDQIVSICMILLYADKSQELQKLTYKSLYYIFDPCKKSHPI
AEGIHGYNDWTLRHQNLFEEKMEHILSFIEESDVIVAHNVNFDMKFIRNSFANAKIDIGK
IGTMCTMEMHGGSLSACSKRLGIQRKTSIHDAAEDVLMCMCLYLEKMSNINVLDMYHSFT
LPKLKNFIEPPPVPDGKLPRRNNIKKRNEILGEKFIK

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.