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CDS Information : APA32_24990

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close this sectionGenomic map

Display Clone

Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190) chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Acetobacter pasteurianus IFO 3283-32 (= NBRC 105190)
Replicon chromosome
Start / Stop / Direction 2,705,405 / 2,704,260 / -
Location complement(2704260..2705405)
Type CDS
Length 1,146 bp (381 aa)

close this sectionAnnotation

Product Alanine racemase
Gene name
Functional category Metabolic
EC number
Note
KEGG pathway map:00252 KO:K01775
map:00473 KO:K01775
Sequence feature
References

close this sectionComputational search results

BLASTP
Database:UniProtKB:15.0
1E=0A1XDT8_ACEACAlanine racemaseAlignment
2E=1e-115A9HMX6_GLUDAAlanine racemase
Putative alanine racemase, catabolic
Alignment
3E=4e-99B1M861_METRJAlanine racemaseAlignment
4E=2e-96Q5FP99_GLUOXAlanine racemaseAlignment
5E=6e-93A9H9C8_GLUDAPutative alanine racemase, catabolicAlignment
HAMAP No significant hit
InterPro
Database:interpro:18.0
IPR000821 Alanine racemase region (Domain)
 [49-59]  PS00395
PS00395   ALANINE_RACEMASE
 [19-379]  2.7e-66 TIGR00492
TIGR00492   alr: alanine racemase
IPR001608 Alanine racemase, N-terminal (Domain)
 [21-242]  1.6e-72 PF01168
PF01168   Ala_racemase_N
IPR009006 Alanine racemase/group IV decarboxylase, C-terminal (Domain)
 [239-377]  1e-38 G3DSA:2.40.37.10
G3DSA:2.40.37.10   no description
 [246-377]  5e-50 SSF50621
SSF50621   Alanine racemase C-terminal domain-like
IPR011079 Alanine racemase, C-terminal (Domain)
 [252-378]  1.1e-43 PF00842
PF00842   Ala_racemase_C
IPR020622 Alanine racemase, pyridoxal-phosphate attachment site (Binding_site)
 [49-59]  PS00395
PS00395   ALANINE_RACEMASE
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 381 amino acids
molecular mass 40,609.65 Da
pI 7.64
aa composition
AlaValLeuIlePheTrpProMetGlySer
14.7
(56aa)
9.4
(36aa)
11.8
(45aa)
2.9
(11aa)
2.6
(10aa)
0.8
(3aa)
5.2
(20aa)
2.1
(8aa)
8.1
(31aa)
6.6
(25aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.9
(15aa)
1.3
(5aa)
2.9
(11aa)
2.9
(11aa)
3.4
(13aa)
3.1
(12aa)
2.9
(11aa)
6
(23aa)
4.5
(17aa)
4.7
(18aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G15-001-132 AS1FE12L00020D06 2,679,518 2,714,214 34,697
G15-001-133 AS1FE12L00024G12 2,700,478 2,735,558 35,081

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.