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CDS Information : APE_0025.1

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Aeropyrum pernix K1T (= NBRC 100138T) chromosome

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close this sectionLocation

Organism Aeropyrum pernix K1T (= NBRC 100138T)
Replicon chromosome
Start / Stop / Direction 16,823 / 16,416 / -
Location complement(16416..16823)
Type CDS
Length 408 bp (135 aa)

close this sectionAnnotation

Product putative transcriptional regulator, TrmB family
Gene name
Functional category Information pathways
- RNA synthesis
- - Regulation
EC number
Note
KEGG pathway
Sequence feature
References Family/Domain:IPR009058
Family/Domain:IPR002831
Uniprot:Q9HGZ9 Pubmed:12426307

close this sectionRelated links to external database

UniProtQ9YG76
INSDBAA78934.2 (DDBJ GenBank EMBL)
RefSeqNP_146909.1 : N-term changed (+12)
GI14600395 : N-term changed (+12)
GeneID1445591 : N-term changed (+12)
UniParcUPI0000E52CF0

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=8e-71Q9YG76_AERPEPutative transcriptional regulator, TrmB familyAlignment
2E=1e-29Q8U315_PYRFUPutative uncharacterized proteinAlignment
3E=5e-17O30026_ARCFUPutative uncharacterized proteinAlignment
4E=2e-16Q8PWN0_METMATranscriptional regulatorAlignment
5E=2e-15Q8PZZ3_METMATranscriptional regulatorAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR002831 Transcriptional regulator TrmB (Domain)
 [10-77]  3.7e-24 PF01978
PF01978   TrmB
IPR002831 Transcriptional regulator TrmB (Family)
 [10-77]  3.7e-24 PF01978
PF01978   TrmB
IPR011991 Winged helix repressor DNA-binding (Domain)
 [2-102]  1.10000029896149e-06 G3DSA:1.10.10.10
G3DSA:1.10.10.10   Wing_hlx_DNA_bd
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 135 amino acids
molecular mass 15,195.65 Da
pI 10.08
aa composition
AlaValLeuIlePheTrpProMetGlySer
5.9
(8aa)		9.6
(13aa)		9.6
(13aa)		6.7
(9aa)		2.2
(3aa)		0.7
(1aa)		5.2
(7aa)		2.2
(3aa)		8.9
(12aa)		9.6
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3
(4aa)		0.7
(1aa)		0.7
(1aa)		0.7
(1aa)		5.9
(8aa)		5.2
(7aa)		0.7
(1aa)		11.1
(15aa)		3
(4aa)		8.1
(11aa)

open this sectionSequence