small fontnormal fontlarge fontmail to

CDS Information : APE_0218

close allopen/close all

close this sectionGenomic map

Display

Aeropyrum pernix K1T (= NBRC 100138T) chromosome

 Legend Jump
Overview 
Genome
Proteome 

close this sectionLocation

Organism Aeropyrum pernix K1T (= NBRC 100138T)
Replicon chromosome
Start / Stop / Direction 158,482 / 157,766 / -
Location complement(157766..158482)
Type CDS
Length 717 bp (238 aa)

close this sectionAnnotation

Product 50S ribosomal protein L2P
Gene name rpl2p
Functional category Information pathways
- Protein synthesis
- - Ribosomal proteins
EC number
Note
KEGG pathway
Sequence feature
References HAMAP:MF_01320
Uniprot:P20276 Pubmed:2406244,9531480,10476961,10937989

close this sectionProteome

Proteome results
2D-PAGE
 1D-PAGE-LC
 MDLC
Show sequence

close this sectionRelated links to external database

UniProtQ9YFN1
INSDBAA79130.1 (DDBJ GenBank EMBL)
RefSeqNP_147055.1
GI14600538
GeneID1445737
UniParcUPI000005DA5A

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-131RL2_AERPE50S ribosomal protein L2PAlignment
2E=6e-94RL2_HYPBU50S ribosomal protein L2PAlignment
3E=9e-93RL2_STAMF50S ribosomal protein L2PAlignment
4E=2e-91D3CPG3_9CRENRibosomal protein L2Alignment
5E=1e-81RL2_DESK150S ribosomal protein L2PAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR002171 Ribosomal protein L2 (Family)
 [1-238]  3.49999466863949e-118 PIRSF002158
PIRSF002158   Ribosomal_L2
 [89-220]  5.40000000000002e-41 PF03947
PF03947   Ribosomal_L2_C
 [11-81]  6.3e-11 PF00181
PF00181   Ribosomal_L2
 [187-198]  PS00467
PS00467   RIBOSOMAL_L2
IPR008991 Translation protein SH3-like (Domain)
 [91-237]  5.2e-51 SSF50104
SSF50104   Transl_SH3_like
IPR008994 Nucleic acid-binding, OB-fold (Domain)
 [2-90]  5e-21 SSF50249
SSF50249   Nucleic_acid_OB
IPR012340 Nucleic acid-binding, OB-fold (Domain)
 [2-78]  1.99999636034536e-18 G3DSA:2.40.50.140
G3DSA:2.40.50.140   OB_NA_bd_sub
IPR014726 Ribosomal protein L2, domain 3 (Domain)
 [160-235]  2.39999798157241e-32 G3DSA:4.10.950.10
G3DSA:4.10.950.10   Ribosomal_L2
IPR022666 Ribosomal Proteins L2, RNA binding domain (Domain)
 [11-81]  6.3e-11 PF00181
PF00181   Ribosomal_L2
IPR022669 Ribosomal protein L2, C-terminal (Domain)
 [89-220]  5.40000000000002e-41 PF03947
PF03947   Ribosomal_L2_C
IPR022671 Ribosomal protein L2, conserved site (Conserved_site)
 [187-198]  PS00467
PS00467   RIBOSOMAL_L2
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 238 amino acids
molecular mass 25,740.91 Da
pI 11.81
aa composition
AlaValLeuIlePheTrpProMetGlySer
10.9
(26aa)		7.6
(18aa)		5.5
(13aa)		5.5
(13aa)		1.7
(4aa)		0.8
(2aa)		9.2
(22aa)		2.1
(5aa)		13.9
(33aa)		2.5
(6aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.8
(9aa)		0
(0aa)		1.7
(4aa)		2.1
(5aa)		2.5
(6aa)		7.6
(18aa)		3.4
(8aa)		11.8
(28aa)		2.9
(7aa)		4.6
(11aa)

open this sectionSequence