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CDS Information : APE_0257

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Aeropyrum pernix K1T (= NBRC 100138T) chromosome

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Organism Aeropyrum pernix K1T (= NBRC 100138T)
Replicon chromosome
Start / Stop / Direction 184,505 / 183,945 / -
Location complement(183945..184505)
Type CDS
Length 561 bp (186 aa)

close this sectionAnnotation

Product DNA-directed RNA polymerase subunit E
Gene name rpoE1
Functional category Information pathways
- RNA synthesis
EC number 2.7.7.6
Note
KEGG pathway
Sequence feature
References Uniprot:P39466 Pubmed:8127719
Uniprot:Q57840 Pubmed:11741548

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Proteome results
2D-PAGE
 2D-PAGE (Protein Sequencer)
 1D-PAGE-LC
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close this sectionRelated links to external database

UniProtQ9YFJ0
INSDBAA79171.1 (DDBJ GenBank EMBL)
RefSeqNP_147087.1
GI14600570
GeneID1445769
UniParcUPI000005DA83

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-100Q9YFJ0_AERPEDNA-directed RNA polymerase subunit EAlignment
2E=2e-26Q975P0_SULTO183aa long hypothetical DNA-directed RNA polymerase subunit EAlignment
3E=2e-26RPOE1_METJADNA-directed RNA polymerase subunit E'Alignment
4E=3e-26A8MDV7_CALMQDNA-directed RNA polymeraseAlignment
5E=4e-26Q9UY23_PYRABRpoE1 DNA-directed RNA polymerase, subunit E'Alignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR003029 S1, RNA binding (Domain)
 [85-169]  PS50126
PS50126   S1
 [86-154]  1.7e-06 PF00575
PF00575   S1
 [83-169]  5.59999989417023e-06 SM00316
SM00316   S1
IPR004519 DNA-directed RNA polymerase (Family)
 [1-182]  2.19999900980708e-19 TIGR00448
TIGR00448   rpoE
IPR005576 RNA polymerase Rpb7, N-terminal (Domain)
 [1-82]  5.40000570248829e-13 G3DSA:3.30.1490.120
G3DSA:3.30.1490.120   G3DSA:3.30.1490.120
 [19-80]  2.1e-09 PF03876
PF03876   RNA_pol_Rpb7_N
 [1-81]  8.2e-13 SSF88798
SSF88798   SSF88798
IPR008994 Nucleic acid-binding, OB-fold (Domain)
 [82-186]  1.1e-12 SSF50249
SSF50249   Nucleic_acid_OB
IPR012340 Nucleic acid-binding, OB-fold (Domain)
 [86-186]  5.2999965755024e-15 G3DSA:2.40.50.140
G3DSA:2.40.50.140   OB_NA_bd_sub
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 186 amino acids
molecular mass 20,711.92 Da
pI 5.38
aa composition
AlaValLeuIlePheTrpProMetGlySer
6.5
(12aa)		13.4
(25aa)		8.1
(15aa)		7.5
(14aa)		1.6
(3aa)		1.1
(2aa)		5.9
(11aa)		2.7
(5aa)		9.7
(18aa)		4.8
(9aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
1.6
(3aa)		0
(0aa)		1.1
(2aa)		2.2
(4aa)		4.3
(8aa)		4.3
(8aa)		1.6
(3aa)		8.6
(16aa)		6.5
(12aa)		8.6
(16aa)

open this sectionSequence