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CDS Information : APE_0345.1

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Aeropyrum pernix K1T (= NBRC 100138T) chromosome

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Organism Aeropyrum pernix K1T (= NBRC 100138T)
Replicon chromosome
Start / Stop / Direction 251,585 / 251,106 / -
Location complement(251106..251585)
Type CDS
Length 480 bp (159 aa)

close this sectionAnnotation

Product 50S ribosomal protein L30P
Gene name rpl30p
Functional category Information pathways
- Protein synthesis
- - Ribosomal proteins
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:O05642 Pubmed:10381320,10882112
Uniprot:P14035 Pubmed:2530355

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Proteome results
2D-PAGE
 1D-PAGE-LC
 MDLC
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close this sectionRelated links to external database

UniProtQ9YF96 : N-term changed (+9)
INSDBAA79300.2 (DDBJ GenBank EMBL)
RefSeqNP_147166.1 : N-term changed (+9)
GI14600649 : N-term changed (+9)
GeneID1444563 : N-term changed (+9)
UniParcUPI000005DAE1 : N-term changed (+9)

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=9e-85RL30_AERPE50S ribosomal protein L30PAlignment
2E=1e-43RL30_IGNH450S ribosomal protein L30PAlignment
3E=3e-43RL30_HYPBU50S ribosomal protein L30PAlignment
4E=5e-42RL30_STAMF50S ribosomal protein L30PAlignment
5E=3e-40D3CPI4_9CRENRibosomal protein L30PAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000517 Ribosomal protein L30 (Domain)
 [3-54]  4.80000000000001e-12 PF00327
PF00327   Ribosomal_L30
IPR000517 Ribosomal protein L30 (Family)
 [3-54]  4.80000000000001e-12 PF00327
PF00327   Ribosomal_L30
IPR000517 Ribosomal protein L30p/L7e, conserved region (Region)
 [3-54]  4.80000000000001e-12 PF00327
PF00327   Ribosomal_L30
IPR005997 Ribosomal protein L30, archaeal (Family)
 [4-159]  6.19996040581186e-104 TIGR01309
TIGR01309   L30P_arch
IPR016082 Ribosomal protein L30, ferredoxin-like fold domain (Domain)
 [3-159]  3.89999861795218e-46 SSF55129
SSF55129   Ribosomal_L30
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 159 amino acids
molecular mass 18,403.47 Da
pI 10.05
aa composition
AlaValLeuIlePheTrpProMetGlySer
3.1
(5aa)		5.7
(9aa)		15.1
(24aa)		5.7
(9aa)		2.5
(4aa)		1.3
(2aa)		5
(8aa)		2.5
(4aa)		10.1
(16aa)		3.8
(6aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.4
(7aa)		0
(0aa)		1.3
(2aa)		0
(0aa)		4.4
(7aa)		6.9
(11aa)		2.5
(4aa)		11.3
(18aa)		5
(8aa)		9.4
(15aa)

open this sectionSequence