small fontnormal fontlarge fontmail to

CDS Information : APE_0350

close allopen/close all

close this sectionGenomic map

Display

Aeropyrum pernix K1T (= NBRC 100138T) chromosome

 Legend Jump
Overview 
Genome
Proteome 

close this sectionLocation

Organism Aeropyrum pernix K1T (= NBRC 100138T)
Replicon chromosome
Start / Stop / Direction 254,454 / 253,906 / -
Location complement(253906..254454)
Type CDS
Length 549 bp (182 aa)

close this sectionAnnotation

Product 50S ribosomal protein L6P
Gene name rpl6p
Functional category Information pathways
- Protein synthesis
- - Ribosomal proteins
EC number
Note
KEGG pathway
Sequence feature
References Uniprot:O05637 Pubmed:10381320
Uniprot:P14030 Pubmed:2530355

close this sectionProteome

Proteome results
2D-PAGE
 1D-PAGE-LC
 MDLC
Show sequence

close this sectionRelated links to external database

UniProtQ9YF91
INSDBAA79305.1 (DDBJ GenBank EMBL)
RefSeqNP_147171.1
GI14600654
GeneID1444568
UniParcUPI000005DAE6

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-97RL6_AERPE50S ribosomal protein L6PAlignment
2E=8e-65RL6_HYPBU50S ribosomal protein L6PAlignment
3E=5e-58RL6_STAMF50S ribosomal protein L6PAlignment
4E=2e-57D3CPH9_9CRENRibosomal protein L6Alignment
5E=5e-57RL6_DESK150S ribosomal protein L6PAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR000702 Ribosomal protein L6 (Family)
 [7-86]  6.5999985252641e-18 G3DSA:3.90.930.12 [87-179]  1.30000495407324e-35 G3DSA:3.90.930.12
G3DSA:3.90.930.12   Ribosomal_L6
 [13-86]  2.9e-14 PF00347 [98-172]  8.1e-12 PF00347
PF00347   Ribosomal_L6
 [10-86]  5.3e-18 SSF56053 [87-179]  1.1e-30 SSF56053
SSF56053   Ribosomal_L6
 [3-181]  8.90000829418053e-32 PIRSF002162
PIRSF002162   Ribosomal_L6
IPR002359 Ribosomal protein L6, conserved site-2 (Conserved_site)
 [157-178]  PS00700
PS00700   RIBOSOMAL_L6_2
IPR002359 Ribosomal protein L6, signature 2 (Family)
 [157-178]  PS00700
PS00700   RIBOSOMAL_L6_2
IPR019907 Ribosomal protein L6P, archaea (Family)
 [8-178]  1.3000049540733e-96 TIGR03653
TIGR03653   Arch_L6P
IPR020040 Ribosomal protein L6, alpha-beta domain (Domain)
 [10-86]  5.3e-18 SSF56053 [87-179]  1.1e-30 SSF56053
SSF56053   Ribosomal_L6
 [13-86]  2.9e-14 PF00347 [98-172]  8.1e-12 PF00347
PF00347   Ribosomal_L6
 [7-86]  6.5999985252641e-18 G3DSA:3.90.930.12 [87-179]  1.30000495407324e-35 G3DSA:3.90.930.12
G3DSA:3.90.930.12   Ribosomal_L6
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 182 amino acids
molecular mass 20,265.70 Da
pI 10.24
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.1
(13aa)		14.8
(27aa)		3.8
(7aa)		9.3
(17aa)		4.4
(8aa)		0
(0aa)		2.2
(4aa)		3.3
(6aa)		9.3
(17aa)		4.4
(8aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
1.6
(3aa)		0
(0aa)		2.7
(5aa)		2.2
(4aa)		2.2
(4aa)		9.3
(17aa)		2.2
(4aa)		7.7
(14aa)		5.5
(10aa)		7.7
(14aa)

open this sectionSequence