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CDS Information : APE_0363

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Aeropyrum pernix K1T (= NBRC 100138T) chromosome

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Organism Aeropyrum pernix K1T (= NBRC 100138T)
Replicon chromosome
Start / Stop / Direction 259,013 / 258,273 / -
Location complement(258273..259013)
Type CDS
Length 741 bp (246 aa)

close this sectionAnnotation

Product 30S ribosomal protein S3P
Gene name rps3p
Functional category Information pathways
- Protein synthesis
- - Ribosomal proteins
EC number
Note
KEGG pathway
Sequence feature
References HAMAP:MF_01309
Uniprot:P15009 Pubmed:2470481

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Proteome results
2D-PAGE
 2D-PAGE (Protein Sequencer)
 1D-PAGE-LC
 MDLC
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UniProtQ9YF78
INSDBAA79318.1 (DDBJ GenBank EMBL)
RefSeqNP_147181.1
GI14600662
GeneID1444576
UniParcUPI000005DAF3

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-139RS3_AERPE30S ribosomal protein S3PAlignment
2E=2e-60RS3_HYPBU30S ribosomal protein S3PAlignment
3E=1e-56RS3_IGNH430S ribosomal protein S3PAlignment
4E=1e-53D0KTB9_SULS9Ribosomal protein S3Alignment
5E=1e-53RS3_SULSO30S ribosomal protein S3PAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR001351 Ribosomal protein S3, C-terminal (Domain)
 [100-184]  1.9e-16 PF00189
PF00189   Ribosomal_S3_C
 [143-179]  PS00548
PS00548   RIBOSOMAL_S3
 [89-189]  2.49999811956444e-22 G3DSA:3.30.1140.32
G3DSA:3.30.1140.32   Ribosomal_S3_C
 [88-189]  5.3e-28 SSF54821
SSF54821   Ribosomal_S3_C
IPR004044 K Homology, type 2 (Domain)
 [19-98]  PS50823
PS50823   KH_TYPE_2
 [44-98]  3.2e-05 PF07650
PF07650   KH_2
IPR004087 K Homology (Domain)
 [40-106]  0.00170000015610474 SM00322
SM00322   KH
IPR004088 K Homology, type 1 (Domain)
 [41-89]  PS50084
PS50084   KH_TYPE_1
IPR005703 Eukaryotic/archaeal ribosomal protein S3 (Family)
 [5-198]  TIGR01008
TIGR01008   rpsC_E_A
IPR009019 K Homology, prokaryotic type (Domain)
 [7-85]  3.6e-13 SSF54814
SSF54814   KH_prok
IPR018280 Ribosomal protein S3, conserved site (Conserved_site)
 [143-179]  PS00548
PS00548   RIBOSOMAL_S3
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 246 amino acids
molecular mass 27,748.81 Da
pI 10.02
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.5
(21aa)		8.9
(22aa)		6.5
(16aa)		8.1
(20aa)		3.7
(9aa)		0.8
(2aa)		4.1
(10aa)		1.6
(4aa)		7.3
(18aa)		5.3
(13aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.5
(11aa)		0
(0aa)		2.8
(7aa)		3.3
(8aa)		1.6
(4aa)		6.1
(15aa)		2.4
(6aa)		10.2
(25aa)		3.7
(9aa)		10.6
(26aa)

open this sectionSequence