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CDS Information : APE_0443.1

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Aeropyrum pernix K1T (= NBRC 100138T) chromosome

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Organism Aeropyrum pernix K1T (= NBRC 100138T)
Replicon chromosome
Start / Stop / Direction 310,214 / 309,915 / -
Location complement(309915..310214)
Type CDS
Length 300 bp (99 aa)

close this sectionAnnotation

Product DNA-directed RNA polymerase subunit L
Gene name rpoL
Functional category Information pathways
- RNA synthesis
EC number 2.7.7.6
Note
KEGG pathway
Sequence feature
References HAMAP:MF_00261
Uniprot:P38902 Pubmed:8508029
Uniprot:O08740 Pubmed:9099876

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Proteome results
2D-PAGE (Protein Sequencer)
 1D-PAGE-LC
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UniProtQ9YEZ1 : N-term changed (+9)
INSDBAA79405.2 (DDBJ GenBank EMBL)
RefSeqNP_147236.1 : N-term changed (+9)
GI14600715 : N-term changed (+9)
GeneID1444631 : N-term changed (+9)
UniParcUPI000005DB4A : N-term changed (+9)

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=1e-48RPOL_AERPEDNA-directed RNA polymerase subunit LAlignment
2E=0.0007D0KRY5_SULS9RNA polymerase dimerizationAlignment
3E=0.0007RPOL_SULSODNA-directed RNA polymerase subunit LAlignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR008193 DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (Conserved_site)
 [18-49]  PS01154
PS01154   RNA_POL_L_13KD
IPR008193 DNA-directed RNA polymerase, 13 to 16 kDa subunit (Family)
 [18-49]  PS01154
PS01154   RNA_POL_L_13KD
IPR009025 RNA polymerase, RBP11-like (Domain)
 [4-96]  1.3999989204989e-19 SSF55257
SSF55257   RNAP_RBP11-like
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 99 amino acids
molecular mass 11,547.22 Da
pI 5.78
aa composition
AlaValLeuIlePheTrpProMetGlySer
5.1
(5aa)		10.1
(10aa)		10.1
(10aa)		8.1
(8aa)		1
(1aa)		0
(0aa)		2
(2aa)		2
(2aa)		8.1
(8aa)		4
(4aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
2
(2aa)		0
(0aa)		1
(1aa)		2
(2aa)		8.1
(8aa)		5.1
(5aa)		2
(2aa)		11.1
(11aa)		7.1
(7aa)		11.1
(11aa)

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