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CDS Information : APE_1852.1

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Aeropyrum pernix K1T (= NBRC 100138T) chromosome

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Organism Aeropyrum pernix K1T (= NBRC 100138T)
Replicon chromosome
Start / Stop / Direction 1,169,627 / 1,168,404 / -
Location complement(1168404..1169627)
Type CDS
Length 1,224 bp (407 aa)

close this sectionAnnotation

Product DNA-directed RNA polymerase subunit A
Gene name rpoA2
Functional category Information pathways
- RNA synthesis
EC number 2.7.7.6
Note
KEGG pathway
Sequence feature
References HAMAP:MF_00411
Uniprot:P11514 Pubmed:2499884,2501756
Uniprot:P29158 Pubmed:1408768
Uniprot:Q8U0M4 Pubmed:14617625

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Proteome results
2D-PAGE
 1D-PAGE-LC
 MDLC
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close this sectionRelated links to external database

UniProtQ9YAU2 : N-term changed (+9)
INSDBAA80856.2 (DDBJ GenBank EMBL)
UniParcUPI000005E0F4 : N-term changed (+9)

close this sectionComputational search results

BLASTP
Database:UniProtKB:2010_04
1E=0RPOA2_AERPEDNA-directed RNA polymerase subunit A''Alignment
2E=1e-98RPOA2_SULTODNA-directed RNA polymerase subunit A''Alignment
3E=7e-97A2BN35_HYPBUDNA-directed RNA polymerase subunit A''Alignment
4E=7e-96A3DMP5_STAMFDNA-directed RNA polymerase, subunit A'Alignment
5E=5e-94D3CQJ3_9CRENDNA-directed RNA polymerase, subunit A''Alignment
HAMAP No significant hit
InterPro
Database:interpro:25.0
IPR007081 RNA polymerase Rpb1, domain 5 (Domain)
 [25-350]  6.59999999999996e-48 PF04998
PF04998   RNA_pol_Rpb1_5
IPR012757 DNA-directed RNA polymerase, subunit A'' (Family)
 [17-403]  TIGR02389
TIGR02389   RNA_pol_rpoA2
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 407 amino acids
molecular mass 45,739.56 Da
pI 4.57
aa composition
AlaValLeuIlePheTrpProMetGlySer
7.4
(30aa)		9.6
(39aa)		9.8
(40aa)		7.9
(32aa)		1.7
(7aa)		0.7
(3aa)		3.2
(13aa)		2.7
(11aa)		7.1
(29aa)		4.4
(18aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.9
(20aa)		0
(0aa)		2
(8aa)		2.5
(10aa)		3.9
(16aa)		7.4
(30aa)		1
(4aa)		5.7
(23aa)		5.4
(22aa)		12.8
(52aa)

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