CDS Information : APE_2423
open/close allGenomic map
| Cell envelope and cellular processes |
| Cell wall |
| Transformation/competence |
| Transport/binding proteins and lipoproteins |
| Sensors (signal transduction) |
| Membrane bioenergetics (electron transport chain and ATP synthase) |
| Mobility and chemotaxis |
| Protein secretion |
| Cell division |
| Sporulation |
| Germination |
| Intermediary metabolism |
| Metabolism of carbohydrates and related molecules |
| Specific pathways |
| Main glycolytic pathways |
| TCA cycle |
| Metabolism of amino acids and related molecules |
| Metabolism of nucleotides and nucleic acids |
| Metabolism of lipids |
| Metabolism of coenzymes and prosthetic groups |
| Metabolism of phosphate |
| Metabolism of sulfur |
| Information pathways |
| DNA replication |
| DNA restriction/modification and repair |
| DNA recombination |
| DNA packaging and segregation |
| RNA synthesis |
| Initiation |
| Regulation |
| Elongation |
| Termination |
| RNA modification |
| Protein synthesis |
| Ribosomal proteins |
| Aminoacyl-tRNA synthetases |
| Initiation |
| Elongation |
| Termination |
| Protein modification |
| Protein folding |
| Other functions |
| Adaptation to atypical conditions |
| Detoxification |
| Antibiotic production |
| Phage-related functions |
| Transposon and IS |
| Miscellaneous |
| Similar to unknown proteins |
| From B. subtilis |
| From other organisms |
| No similarity |
Location
| Organism |
Aeropyrum pernix K1T (= NBRC 100138T) |
| Replicon |
chromosome |
| Start / Stop / Direction |
1,534,231 / 1,535,379 / + |
| Location |
1534231..1535379 |
| Type |
CDS |
| Length |
1,149 bp (382 aa) |
Annotation
| Product |
aspartate aminotransferase |
| Gene name |
|
| Functional category |
Intermediary metabolism
- Metabolism of amino acids and related molecules |
| EC number |
2.6.1.1 |
| Note |
|
| KEGG pathway |
|
| Sequence feature |
|
| References |
Uniprot:Q59569 Pubmed:8206881
DOGAN:APE_2423 Pubmed:16652221 |
Proteome
| Proteome results |
2D-PAGE
|
2D-PAGE (Protein Sequencer)
|
1D-PAGE-LC
|
MDLC
|
Show sequence
|
Related links to external database
Computational search results
BLASTP
Database:UniProtKB:2010_04
|
|
| HAMAP |
No significant hit |
InterPro
Database:interpro:25.0
|
| IPR000192 Aminotransferase, class V/Cysteine desulfurase (Domain) |  ![[4-323] 8.59999999999999e-31 PF00266](/dogan/img/H.gif "[4-323] 8.59999999999999e-31 PF00266")
| PF00266 Aminotran_5 | | IPR000192 Aminotransferase, class V (Family) |
| PF00266 Aminotran_5 | ![[180-200] PS00595](/dogan/img/P.gif "[180-200] PS00595")
| PS00595 AA_TRANSFER_CLASS_5 | | IPR000192 Aminotransferase, class V/Cysteine desulfurase (Region) |
| PF00266 Aminotran_5 | | IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (Domain) | ![[2-257] 8.99992502689935e-76 G3DSA:3.40.640.10](/dogan/img/X2.gif "[2-257] 8.99992502689935e-76 G3DSA:3.40.640.10")
| G3DSA:3.40.640.10 PyrdxlP-dep_Trfase_major_sub1 | | IPR015424 Pyridoxal phosphate-dependent transferase, major region (Domain) | ![[3-360] 1.7e-98 SSF53383](/dogan/img/B.gif "[3-360] 1.7e-98 SSF53383")
| SSF53383 PyrdxlP-dep_Trfase_major | | IPR020578 Aminotransferase class-V pyridoxal-phosphate binding site (Binding_site) |
| PS00595 AA_TRANSFER_CLASS_5 |
|
| SignalP |
No significant hit |
| TMHMM |
No significant hit |
| SOSUI |
No significant hit |
Calculated information (Amino acid sequence)
| size of protein |
382 amino acids |
| molecular mass |
41,262.47 Da |
| pI |
6.82 |
| aa composition |
| Ala | Val | Leu | Ile | Phe | Trp | Pro | Met | Gly | Ser |
|---|
9.7
(37aa) | 10.7
(41aa) | 11.3
(43aa) | 3.9
(15aa) | 4.5
(17aa) | 0.8
(3aa) | 3.9
(15aa) | 2.6
(10aa) | 10.7
(41aa) | 7.6
(29aa) |
| Thr | Cys | Asn | Gln | Tyr | Lys | His | Arg | Asp | Glu |
|---|
4.2
(16aa) | 0
(0aa) | 1.8
(7aa) | 1.6
(6aa) | 2.1
(8aa) | 3.1
(12aa) | 1.6
(6aa) | 8.1
(31aa) | 3.9
(15aa) | 7.9
(30aa) |
|
Sequence
>APE_2423 aspartate aminotransferase
ATGGCCAGGCTACTCATGATTCCAGGTCCTACACCCGTCGACCCAGAAGTGCTGCTTGCC
ATGGCCAGGCCGGTTATAAGCCACACCTCCCCCGATTTCGACGAGATCCACGGCGAAACA
GTGTCTATGCTCCAAAAACTCTTCAGGACCTCCGGCAAGGTGTTTCTCCTCCCGGGCAGC
GGCAGCCTAGGCATGGAGTTTGCCGTTAGGAGCGTTGCAGGGAGGGGGTCTAGGGCTCTG
GTTTTGAAGGCAGGCTACTTTGGAGGGTATTTCGAGAGGATACTAAGATCCCTTGGAGCT
TCCGTGACTGTCGTTGAATCTCCAGTGGGCAGGGGTTTCACGGGTGCTGATGTGGAGGAG
GCTCTGGATAGGGCTGGGGATGTTGATGTTGTGTTTGTTCAGCACGTCGAGACGAGCACC
TCGGTGGCTAACCCTGTGAGGGAGATAGCCGGGGTTGTGAAGAAGAATGGTGCAAGGCTT
GTTGTGGACGGTATTGCCAGCGTGGGAGGCATGGACCTCAGGCTAGATGAGTGGGGTGTG
GATGTGGCCCTGACGGGTAGCCAGAAAGCGCTTAGCACGCCGCCGGGGTTAGCTATAGTC
GCTTTCAGCAGCGAATATTCGGTGGAGCTGGAGAAGAGGGAACCCAGTGGCATCTACTTC
GACTTCCTCTCCCTCTCCCGGGAGATGGAGTCTACCAGGAACTACCATATAACGCCGGCG
GTCAACCTCGTGTTCGCCCTGAACGCCAGTCTAAAGAGGATTTTGGGCGAGGGCTTGGAA
AACAGGTTTGAGAGGCACCGTGTCCTGGCTAGAGCGTTTACCAGGGCAATGGAGGCTCTC
GGTTTAAGGCTGGTGGCTGAGGAGCCTTTTAGAGCCTGGACGGTGACGGCGGTCTACCTG
CCACAGGGTATTGATTGGTCCCGTTTCTACAGCGTGATGAGGAAGAGGGGTGTGGAGGTC
GCCGGGGGTCTGGGCGGTTTGAAGGGTAAGATATTTAGGGTTGGCCACATGGGTGAGGTG
GATGCTAACGATTTGATAGCGACGATAGCCGCTATAGAGCGTAGCCTGGTGGAGCTTGGC
TATAGGGAGGCGAGGCTGGGCCAAGGGCTAGAGGCTGCTCAGAAGGAACTCTCTAGCCTA
GGCCTCTAG
>APE_2423 aspartate aminotransferase
MARLLMIPGPTPVDPEVLLAMARPVISHTSPDFDEIHGETVSMLQKLFRTSGKVFLLPGS
GSLGMEFAVRSVAGRGSRALVLKAGYFGGYFERILRSLGASVTVVESPVGRGFTGADVEE
ALDRAGDVDVVFVQHVETSTSVANPVREIAGVVKKNGARLVVDGIASVGGMDLRLDEWGV
DVALTGSQKALSTPPGLAIVAFSSEYSVELEKREPSGIYFDFLSLSREMESTRNYHITPA
VNLVFALNASLKRILGEGLENRFERHRVLARAFTRAMEALGLRLVAEEPFRAWTVTAVYL
PQGIDWSRFYSVMRKRGVEVAGGLGGLKGKIFRVGHMGEVDANDLIATIAAIERSLVELG
YREARLGQGLEAAQKELSSLGL
