CDS Information : BBR47_00020

Display	1000bp 10000bp 100000bp Clone

Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	2,034 / 3,173 / +
Location	2034..3173
Type	CDS
Length	1,140 bp (379 aa)

Product	DNA polymerase III beta subunit
Gene name	dnaN
Functional category	Information pathways - DNA replication
EC number	2.7.7.7
Note	dnaN in Bacillus subtilis.
KEGG pathway	KO:K02338 ec:2.7.7.7
Sequence feature
References	Uniprot:P05649 Pubmed:11395445,9799485

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=1e-124 Q2B0H5_9BACI DNA polymerase III subunit beta Alignment 2 E=1e-123 Q5L3Z1_GEOKA DNA-directed DNA polymerase III beta subunit Alignment 3 E=1e-122 DPO3B_BACSU DNA polymerase III subunit beta Alignment 4 E=1e-121 A6CPN0_9BACI DNA polymerase III subunit beta Alignment 5 E=1e-121 A4IJ85_GEOTN DNA polymerase III, beta subunit Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001001 DNA polymerase III, beta chain (Family) PF02768   DNA_pol3_beta_3 G3DSA:3.10.150.10   no description PF00712   DNA_pol3_beta PF02767   DNA_pol3_beta_2 TIGR00663   dnan: DNA polymerase III, beta subunit SM00480   no description IPR022634 DNA polymerase III, beta chain, N-terminal (Domain) PF00712   DNA_pol3_beta IPR022635 DNA polymerase III, beta chain, C-terminal (Domain) PF02768   DNA_pol3_beta_3 IPR022637 DNA polymerase III, beta chain, central (Domain) PF02767   DNA_pol3_beta_2 IPR024693 DNA polymerase III beta, domain (Domain) G3DSA:3.10.150.10   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	379 amino acids
molecular mass	42,014.31 Da
pI	5.3
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 5.8 (22aa) 8.4 (32aa) 9 (34aa) 8.7 (33aa) 2.9 (11aa) 0.8 (3aa) 5 (19aa) 3.4 (13aa) 4.7 (18aa) 9 (34aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 7.4 (28aa) 0.8 (3aa) 3.2 (12aa) 3.2 (12aa) 1.3 (5aa) 5.8 (22aa) 2.4 (9aa) 4.7 (18aa) 6.6 (25aa) 6.9 (26aa)

>BBR47_00020 DNA polymerase III beta subunit
ATGCATATTACCGTTCAGCGTGAAAAGCTATCGAACGCCGTATCGCATGTTAGCAAAGCA
GTTTCTAGCAGAACTACGATTCCAATTTTGACCGGGATTAAAATCAAAACGGATGACGAA
GGCTTGACACTAACAGCAAGCGATTCTGATGTGTCTATTGAAGTTCAGATCCCGATGGAA
GAAGCCGGAGAATGGGGAGTAACCGTACATCAACCTGGTAGCATTGTGTTGACTGCACGT
ATTTTCAGCGAAATCGTGCGCAAGCTGCCAAGCAATGAAATCGATATTCAAGTGGATGAT
CGTCTCGCAACCAAAATTCGTTCCGGACAAGCTGAGTTCACCATTAACGGAATGGATGCC
AACGAATATCCACAATTGCCGCATCTGGAAGAAGATAAAGTCTTCAGTGTTCCCTGTGAT
TTACTGAAAGCAATGATTCGCCAGACGGTTTTTGGTGTTTCCACTTCCGAAATGCGCCCG
ATCTTGACCGGTTTAATGTGGTCGCTTGATCAAGGCAAATTGCGTTTTGTGGCAACTGAC
AGCCATCGCTTAGCTAGCCGTACCGCAATGGTTGAATGCCCAGAAGATCTTTCTTTCCAC
AACGTGGTAGTTCCGGGTAAAAGCTGCAATGAATTGGTAAAAATATTAGATGATGACCAA
AATCTCGCGGATATCGTTGTTGCGGACAACCAAATCCTAGTGAAGTCCAAGCATATCCTT
TTCTATTCCCGTCTCTTGGAAGGAACCTATCCGGACACGACCAGAATTATTCCACAAGGC
AGCAAAACGGAGATCACTGTGAGCACCAAGGAGTTTTTGCAATCTATCGAGCGCGCTTCC
TTGCTGAGCCGCGAAGGCAAATCGAACGTAGTCAAGCTCGTTACGATGCCTGATGGAACC
GTAGAAATTACGTCCAATGCACCTGAGATCGGGAAAGTAACCGACATTTTGATGCCAAAA
GCAATGAATGGCGAAGAATTGAAAATTTCCTTCAACGCCAAATACATGATCGATGCGCTG
CGTGCAATTGATAGCGCAGAAATCAAAGCGAGCTTCAGCGGCCCGATGAGTCCCTTTGTG
ATTCGTCCGACCGATCATGACTGGATGCTCCATCTGATTTTGCCGGTTCGTACGTACTAA


>BBR47_00020 DNA polymerase III beta subunit
MHITVQREKLSNAVSHVSKAVSSRTTIPILTGIKIKTDDEGLTLTASDSDVSIEVQIPME
EAGEWGVTVHQPGSIVLTARIFSEIVRKLPSNEIDIQVDDRLATKIRSGQAEFTINGMDA
NEYPQLPHLEEDKVFSVPCDLLKAMIRQTVFGVSTSEMRPILTGLMWSLDQGKLRFVATD
SHRLASRTAMVECPEDLSFHNVVVPGKSCNELVKILDDDQNLADIVVADNQILVKSKHIL
FYSRLLEGTYPDTTRIIPQGSKTEITVSTKEFLQSIERASLLSREGKSNVVKLVTMPDGT
VEITSNAPEIGKVTDILMPKAMNGEELKISFNAKYMIDALRAIDSAEIKASFSGPMSPFV
IRPTDHDWMLHLILPVRTY

NBRC No.	clone name	start	stop	length(bp)
G10-001-001	BB1FE1L10010D12	205	36,068	35,864
G10-001-233	BB1FE1L10009B07	6,270,485	15,336	41,288

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.