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CDS Information : BBR47_00180

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close this sectionGenomic map

Display Clone

Brevibacillus brevis NBRC 100599 chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Brevibacillus brevis NBRC 100599
Replicon chromosome
Start / Stop / Direction 32,457 / 33,737 / +
Location 32457..33737
Type CDS
Length 1,281 bp (426 aa)

close this sectionAnnotation

Product seryl-tRNA synthetase
Gene name serS
Functional category Information pathways
- Protein synthesis
- - Aminoacyl-tRNA synthetases
EC number 6.1.1.11
Note The T-box motif is found in the upper region of this ORF.
KEGG pathway map:00970 KO:K01875 ec:6.1.1.11
map:00260 KO:K01875 ec:6.1.1.11
Sequence feature
References HAMAP:MF_00176
Uniprot:P0A8L1 Pubmed:3029694

close this sectionComputational search results

BLASTP
Database:UniProtKB:13.0
1E=0SYS_BACLDSeryl-tRNA synthetase
Seryl-tRNA(Ser/Sec) synthetase
Serine--tRNA ligase
SerRS		Alignment
2E=0Q2B0X3_9BACISeryl-tRNA synthetaseAlignment
3E=0A7GJT0_BACCNSeryl-tRNA synthetaseAlignment
4E=0A6CQT3_9BACISeryl-tRNA synthetaseAlignment
5E=0SYS_BACA2Seryl-tRNA synthetase
Seryl-tRNA(Ser/Sec) synthetase
Serine--tRNA ligase
SerRS		Alignment
HAMAP
Database:HAMAP:20080521 
 [1-423]  42.554 MF_00176
MF_00176   SYS
InterPro
Database:interpro:16.0
IPR002314 Aminoacyl-tRNA synthetase, class II (G, H, P and S) (Domain)
 [173-344]  2.1e-70 PF00587
PF00587   tRNA-synt_2b
IPR002317 Seryl-tRNA synthetase, class IIa (Family)
 [264-276]  7.6e-33 PR00981 [276-289]  7.6e-33 PR00981 [316-329]  7.6e-33 PR00981 [333-349]  7.6e-33 PR00981 [351-367]  7.6e-33 PR00981
PR00981   TRNASYNTHSER
 [1-417]  3.5e-195 TIGR00414
TIGR00414   serS: seryl-tRNA synthetase
 [1-108]  1.5e-44 PF02403
PF02403   Seryl_tRNA_N
 [100-425]  4.3e-161 PTHR11778
PTHR11778   SERYL-TRNA SYNTHETASE
IPR006195 Aminoacyl-tRNA synthetase, class II (Domain)
 [172-410]  26.178 PS50862
PS50862   AA_TRNA_LIGASE_II
IPR010978 tRNA-binding arm (Domain)
 [1-113]  1.5e-31 SSF46589
SSF46589   tRNA-binding arm
IPR015866 Seryl-tRNA synthetase, class IIa, N-terminal (Domain)
 [1-108]  1.5e-44 PF02403
PF02403   Seryl_tRNA_N
 [1-105]  2.6e-24 G3DSA:1.10.287.40
G3DSA:1.10.287.40   no description
IPR018156 Seryl-tRNA synthetase, class IIa, C-terminal (Domain)
 [264-276]  7.6e-33 PR00981 [276-289]  7.6e-33 PR00981 [316-329]  7.6e-33 PR00981 [333-349]  7.6e-33 PR00981 [351-367]  7.6e-33 PR00981
PR00981   TRNASYNTHSER
 [100-425]  4.3e-161 PTHR11778
PTHR11778   SERYL-TRNA SYNTHETASE
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 426 amino acids
molecular mass 48,588.17 Da
pI 4.93
aa composition
AlaValLeuIlePheTrpProMetGlySer
8
(34aa)		6.8
(29aa)		8.9
(38aa)		5.6
(24aa)		5.2
(22aa)		0.9
(4aa)		4.5
(19aa)		2.6
(11aa)		5.6
(24aa)		4.5
(19aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.7
(20aa)		0.7
(3aa)		4.2
(18aa)		3.1
(13aa)		2.3
(10aa)		6.1
(26aa)		2.1
(9aa)		7
(30aa)		6.6
(28aa)		10.6
(45aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G10-001-001 BB1FE1L10010D12 205 36,068 35,864
G10-001-002 BB1FE1L10023G09 26,882 59,887 33,006

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.