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CDS Information : BBR47_00190

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close this sectionGenomic map

Display Clone

Brevibacillus brevis NBRC 100599 chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Brevibacillus brevis NBRC 100599
Replicon chromosome
Start / Stop / Direction 34,158 / 35,765 / +
Location 34158..35765
Type CDS
Length 1,608 bp (535 aa)

close this sectionAnnotation

Product malate synthase
Gene name aceB
Functional category Intermediary metabolism
- Metabolism of carbohydrates and related molecules
- - TCA cycle
EC number 2.3.3.9
Note
KEGG pathway map:00620 KO:K01638 ec:2.3.3.9
map:00630 KO:K01638 ec:2.3.3.9
Sequence feature
References Uniprot:Q9RKU9 Pubmed:10941526
Uniprot:Q8VM95 Pubmed:14612238

close this sectionComputational search results

BLASTP
Database:UniProtKB:13.0
1E=0A2U9X8_BACCOMalate synthase AAlignment
2E=0A7GM30_BACCNMalate synthase AAlignment
3E=0A9VIZ3_9BACIMalate synthase AAlignment
4E=0Q73C39_BACC1Malate synthase AAlignment
5E=0Q63EN2_BACCZMalate synthaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001465 Malate synthase (Family)
 [102-535]  3.3e-222 PTHR21631:SF1
PTHR21631:SF1   MALATE SYNTHASE
 [13-535]  PF01274
PF01274   Malate_synthase
 [269-284]  PS00510
PS00510   MALATE_SYNTHASE
IPR006252 Malate synthase A (Family)
 [26-535]  TIGR01344
TIGR01344   malate_syn_A: malate synthase A
 [1-535]  PIRSF001363
PIRSF001363   Malate synthase
IPR011076 Malate synthase-like, core (Domain)
 [13-535]  2.5e-199 SSF51645
SSF51645   Malate synthase G
 [13-535]  PF01274
PF01274   Malate_synthase
IPR011076 Malate synthase-like (Family)
 [13-535]  2.5e-199 SSF51645
SSF51645   Malate synthase G
IPR015813 Pyruvate/Phosphoenolpyruvate kinase, catalytic core (Domain)
 [86-383]  1.4e-08 G3DSA:3.20.20.60
G3DSA:3.20.20.60   no description
IPR019830 Malate synthase, conserved site (Conserved_site)
 [269-284]  PS00510
PS00510   MALATE_SYNTHASE
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 535 amino acids
molecular mass 60,927.52 Da
pI 5.53
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.4
(45aa)		6.7
(36aa)		9.3
(50aa)		6.5
(35aa)		3.2
(17aa)		2.1
(11aa)		5.2
(28aa)		2.8
(15aa)		6
(32aa)		3.6
(19aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.8
(31aa)		0.6
(3aa)		3.9
(21aa)		5.6
(30aa)		3.6
(19aa)		4.5
(24aa)		2.2
(12aa)		6.5
(35aa)		6.2
(33aa)		7.3
(39aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G10-001-001 BB1FE1L10010D12 205 36,068 35,864
G10-001-002 BB1FE1L10023G09 26,882 59,887 33,006

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.