CDS Information : BBR47_00260

Display	1000bp 10000bp 100000bp Clone

Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	41,863 / 42,663 / +
Location	41863..42663
Type	CDS
Length	801 bp (266 aa)

Product	putative transcriptional regulator
Gene name
Functional category	Information pathways - RNA synthesis - - Regulation
EC number
Note	DeoR family.
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=2e-57 A3IC88_9BACI Lactose phosphotransferase system repressor Alignment 2 E=3e-40 Y1102_STAES Uncharacterized HTH-type transcriptional regulator SE_1102 Alignment 3 E=5e-39 A7GMM1_BACCN Transcriptional regulator, DeoR family Alignment 4 E=6e-39 A9VKQ5_9BACI Transcriptional regulator, DeoR family Alignment 5 E=1e-38 B0AQC6_BACAN Transcriptional regulator, DeoR family Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR001034 Bacterial regulatory protein, DeoR N-terminal (Domain) PR00037   HTHLACR PS51000   HTH_DEOR_2 PS00894   HTH_DEOR_1 SM00420   no description PF08220   HTH_DeoR IPR001034 Bacterial regulatory protein, DeoR (Family) SM00420   no description PF08220   HTH_DeoR PS51000   HTH_DEOR_2 PF00455   DeoR PR00037   HTHLACR PS00894   HTH_DEOR_1 IPR014036 Bacterial regulatory protein, DeoR (Domain) PF00455   DeoR IPR018356 Transcription regulator, HTH DeoR-type, conserved site (Conserved_site) PS00894   HTH_DEOR_1
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	266 amino acids
molecular mass	29,511.79 Da
pI	5.6
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 7.9 (21aa) 5.3 (14aa) 11.3 (30aa) 6 (16aa) 3.8 (10aa) 1.1 (3aa) 3.4 (9aa) 3 (8aa) 7.1 (19aa) 5.3 (14aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 8.6 (23aa) 2.3 (6aa) 2.3 (6aa) 7.9 (21aa) 1.5 (4aa) 4.5 (12aa) 2.6 (7aa) 4.5 (12aa) 5.3 (14aa) 6.4 (17aa)

>BBR47_00260 putative transcriptional regulator
ATGACACTATTGCCTGAAGAACGACAGCAAGTGATTCTCGCCGAATTGAACCGCCACGGT
AAAATTCAGGTGATGAGTCTGGCTAAAACCCTGGCAGTAACACCGGAGACCATACGACGT
GATCTGGACCAGTTGGAGCAGCAGCGTTTGTTAAAGCGAGTGTACGGAGGAGCGATCCCT
TATCATTTGGCGAAACGCGAGCCGCATTTTGAAAAGAAACAGGCGATCCAACAGACGGCA
AAAACGAAAATCGGGCAGATCGCGGCAGAACTTTTGTCTGACGGGGATACTATCGCGCTC
GATGTCGGGACGACAACATTGGAATTGGCACGTGCTATCAAGGGCCTCAATCAATTAACG
ATTGTCACGAATTCGCTCCCCGCCGCTTCTTTACTAAACGAGCTGTTAGAAGCCAATCAA
TTCAACGGTCAGGTCATTATGCTGGGGGGGCTGACCCATCCGGCCCAAAAATCGGTTGCC
GGGGCGTTTACCTGCGAGCTGCTCTCTCGTTTTCATTTTGATAAAGCGTTCATTTCTTGT
GGAGGGATCACGGCCGATGGCTTCACGGATTATGACATGGAAGAAACGCTGTGCTCGACC
ATGATGGTACAGCGATCGGAGCAAGTCTATGTATTGGGAGACACATCGAAGATCGGCCAA
ACGCAATTTTTCCATATTTGCGGCTGGCAGGATGTCAGCGCGGTTGTTTGTGACCAGCCG
ATGCCAGATGAATGGCTATCGTCTGGCATGCAAACTACCTGGATAAGCGAACATCCGGGA
AGGAGAGATTTCACATGTTGA


>BBR47_00260 putative transcriptional regulator
MTLLPEERQQVILAELNRHGKIQVMSLAKTLAVTPETIRRDLDQLEQQRLLKRVYGGAIP
YHLAKREPHFEKKQAIQQTAKTKIGQIAAELLSDGDTIALDVGTTTLELARAIKGLNQLT
IVTNSLPAASLLNELLEANQFNGQVIMLGGLTHPAQKSVAGAFTCELLSRFHFDKAFISC
GGITADGFTDYDMEETLCSTMMVQRSEQVYVLGDTSKIGQTQFFHICGWQDVSAVVCDQP
MPDEWLSSGMQTTWISEHPGRRDFTC

NBRC No.	clone name	start	stop	length(bp)
G10-001-002	BB1FE1L10023G09	26,882	59,887	33,006
G10-001-003	BB1FE1L10009G06	40,439	77,360	36,922

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.