CDS Information : BBR47_00440

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Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	56,107 / 56,589 / +
Location	56107..56589
Type	CDS
Length	483 bp (160 aa)

Product	putative tRNA specific adenosine deaminase
Gene name
Functional category	Information pathways - RNA modification
EC number
Note	Similar to YaaJ in Bacillus subtilis.
KEGG pathway
Sequence feature
References	Uniprot:P68398 Pubmed:12110595

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=1e-52 Q8EU63_OCEIH Hypothetical conserved protein Alignment 2 E=2e-52 Q5L3X7_GEOKA Hypothetical conserved protein Alignment 3 E=7e-52 Q9KGM5_BACHD Cu binding protein Mn oxidation Alignment 4 E=1e-51 A4IJ98_GEOTN Cytosine deaminase Alignment 5 E=2e-51 Q5WLZ8_BACSK Cytosine/adenosine deaminase Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR002125 CMP/dCMP deaminase, zinc-binding (Domain) PF00383   dCMP_cyt_deam_1 PS00903   CYT_DCMP_DEAMINASES IPR016192 APOBEC/CMP deaminase, zinc-binding (Conserved_site) PS00903   CYT_DCMP_DEAMINASES IPR016193 Cytidine deaminase-like (Domain) SSF53927   Cytidine deaminase-like
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	160 amino acids
molecular mass	17,852.71 Da
pI	6.76
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 10 (16aa) 7.5 (12aa) 8.1 (13aa) 6.9 (11aa) 1.9 (3aa) 0.6 (1aa) 5 (8aa) 3.8 (6aa) 9.4 (15aa) 1.3 (2aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.1 (5aa) 3.1 (5aa) 2.5 (4aa) 5 (8aa) 3.1 (5aa) 5 (8aa) 1.9 (3aa) 8.1 (13aa) 2.5 (4aa) 11.3 (18aa)

>BBR47_00440 putative tRNA specific adenosine deaminase
GTGATACAAGAAAATGAACATGATTACTATATGAAACAAGCCATGGAAGAGGCCCGGAAA
GCCGCTGCGATTGGTGAGGTTCCAATCGGTGCGGTCATCGTGCGCGACGGGGAAATCGTA
GGTCGCGGCTACAACTTGCGGGAAACACAAAAAGACCCTACCTTGCACGCCGAATTGATC
GCGATACGGGAGGCGAGTGAACGCTTGGGTGGATGGCGCTTGATCGGGTGTACGCTGTAC
GTGACGTTGGAGCCGTGTCCAATGTGTGCGGGTGCAATCGTTCAAAGTCGCATCGAAAAG
GTCGTGTATGGCGCTCGCGATCCAAAGGCAGGATGTGCCGGGACATTAATGAACCTGCTC
GCGGAGCCACGCTTCAATCATCAGGTGCCAGTTATCGAGGGTGTGCTTGCAGAGGAATGC
GGGCAGATGCTCAAGGAATTCTTTCGTGGATTGCGCAAAAAAAGACAGCCGGTACAGGAA
TGA


>BBR47_00440 putative tRNA specific adenosine deaminase
MIQENEHDYYMKQAMEEARKAAAIGEVPIGAVIVRDGEIVGRGYNLRETQKDPTLHAELI
AIREASERLGGWRLIGCTLYVTLEPCPMCAGAIVQSRIEKVVYGARDPKAGCAGTLMNLL
AEPRFNHQVPVIEGVLAEECGQMLKEFFRGLRKKRQPVQE

NBRC No.	clone name	start	stop	length(bp)
G10-001-002	BB1FE1L10023G09	26,882	59,887	33,006
G10-001-003	BB1FE1L10009G06	40,439	77,360	36,922

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.