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CDS Information : BBR47_02930

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close this sectionGenomic map

Display Clone

Brevibacillus brevis NBRC 100599 chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Brevibacillus brevis NBRC 100599
Replicon chromosome
Start / Stop / Direction 292,923 / 294,449 / +
Location 292923..294449
Type CDS
Length 1,527 bp (508 aa)

close this sectionAnnotation

Product putative chitinase D precursor
Gene name chiD
Functional category Other functions
- Miscellaneous
EC number 3.2.1.14
Note chiD in Bacillus circulans.
KEGG pathway
Sequence feature
References Uniprot:P27050 Pubmed:8168626,1729234

close this sectionComputational search results

BLASTP
Database:UniProtKB:13.0
1E=1e-164CHID_BACCIChitinase D precursorAlignment
2E=1e-159Q099U8_STIAUChitinase DAlignment
3E=1e-156Q1CZN0_MYXXDChitinase, class IIAlignment
4E=1e-125Q092X1_STIAUChitinase DAlignment
5E=1e-117Q81A65_BACCRExochitinaseAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR001223 Glycoside hydrolase, family 18, catalytic domain (Domain)
 [183-307]  3.7e-26 PF00704
PF00704   Glyco_hydro_18
IPR001223 Glycoside hydrolase, family 18 (Family)
 [183-307]  3.7e-26 PF00704
PF00704   Glyco_hydro_18
IPR001579 Glycoside hydrolase, chitinase active site (Active_site)
 [287-295]  PS01095
PS01095   CHITINASE_18
IPR003610 Carbohydrate-binding family V/XII (Domain)
 [31-77]  2.2e-08 SM00495
SM00495   no description
 [33-77]  9.2e-14 G3DSA:2.10.10.20
G3DSA:2.10.10.20   no description
 [33-77]  6.2e-14 SSF51055
SSF51055   Carbohydrate binding domain
 [31-65]  9.8e-05 PF02839
PF02839   CBM_5_12
IPR003961 Fibronectin, type III (Domain)
 [86-170]  17.476 PS50853
PS50853   FN3
 [87-164]  3.3e-14 PF00041
PF00041   fn3
 [87-160]  3.2e-10 SM00060
SM00060   no description
IPR008957 Fibronectin, type III-like fold (Domain)
 [84-171]  2.3e-24 G3DSA:2.60.40.30
G3DSA:2.60.40.30   no description
 [84-172]  9.8e-18 SSF49265
SSF49265   Fibronectin type III
IPR011583 Chitinase II (Domain)
 [183-488]  6.1e-07 SM00636
SM00636   no description
IPR011583 Chitinase II (Family)
 [183-488]  6.1e-07 SM00636
SM00636   no description
IPR013781 Glycoside hydrolase, catalytic core (Domain)
 [178-501]  7.4e-19 G3DSA:3.20.20.80
G3DSA:3.20.20.80   no description
IPR017853 Glycoside hydrolase, catalytic core (Domain)
 [183-494]  6e-53 SSF51445
SSF51445   (Trans)glycosidases
SignalP
 [1-30]  0.998 Signal
Bacteria, Gram-positive   
TMHMM No significant hit
SOSUI
 [8-30]  Transmembrane
Transmembrane 1   

close this sectionCalculated information (Amino acid sequence)

size of protein 508 amino acids
molecular mass 54,819.78 Da
pI 5.99
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.7
(44aa)
6.7
(34aa)
8.3
(42aa)
4.9
(25aa)
4.1
(21aa)
1.6
(8aa)
6.1
(31aa)
2.8
(14aa)
8.3
(42aa)
9.6
(49aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
9.3
(47aa)
0.2
(1aa)
5.3
(27aa)
3.9
(20aa)
4.5
(23aa)
3.7
(19aa)
2
(10aa)
2.4
(12aa)
4.7
(24aa)
3
(15aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G10-001-009 BB1FE1L10029E04 265,703 304,114 38,412
G10-001-010 BB1FE1L10033D08 292,603 334,912 42,310

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.