CDS Information : BBR47_24430

Display	1000bp 10000bp 100000bp Clone

Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	2,523,048 / 2,524,217 / +
Location	2523048..2524217
Type	CDS
Length	1,170 bp (389 aa)

Product	30S ribosomal protein S1 homolog
Gene name	ypfD
Functional category	Information pathways - Protein synthesis - - Ribosomal proteins
EC number
Note	ypfD in Bacillus subtilis.
KEGG pathway
Sequence feature
References	Uniprot:P38494 Pubmed:17218307,14586115,7704259 Uniprot:P0AG67 Pubmed:1283001,9716382

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=1e-128 Q9KCD6_BACHD 30S ribosomal protein S1 Alignment 2 E=1e-124 Q5WGU6_BACSK 30S ribosomal protein S1 Alignment 3 E=1e-121 Q65I09_BACLD YpfD Nucleic acid-binding protein Alignment 4 E=1e-121 Q8EQA5_OCEIH 30S ribosomal protein S1 Alignment 5 E=1e-121 A8FEM4_BACP2 Ribosomal protein S1 Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000110 Ribosomal protein S1 (Family) PR00681   RIBOSOMALS1 IPR003029 S1, RNA binding (Domain) PF00575   S1 SM00316   no description PS50126   S1 IPR008994 Nucleic acid-binding, OB-fold (Domain) SSF50249   Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold (Domain) G3DSA:2.40.50.140   no description
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	389 amino acids
molecular mass	42,919.15 Da
pI	4.78
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 5.9 (23aa) 15.4 (60aa) 7.5 (29aa) 5.4 (21aa) 3.1 (12aa) 0.8 (3aa) 2.3 (9aa) 2.1 (8aa) 7.2 (28aa) 6.2 (24aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.9 (15aa) 0 (0aa) 2.6 (10aa) 5.1 (20aa) 0.8 (3aa) 9.8 (38aa) 1.3 (5aa) 3.6 (14aa) 6.9 (27aa) 10.3 (40aa)

>BBR47_24430 30S ribosomal protein S1 homolog
ATGGAAGAAACGAACGTAAGCTTGACGGATGCAACAACGATTTCCGTAGGAGATGTTGTA
AAGGCAACCGTAACAAAAGTTGAGGACAAACAAGCGCTTGTAGATCTAGGTTACAAGTAC
GATGGTCTGATTCCTATCAGCGAACTGTCTCCACTGCATGTTGAAAAGGTATCTGATGTA
GTAGCGGTTGGTGATACTTTCGAAGTGAAAGTCATCAAACTAAACGACGAGAAAGAAGAG
CTCGTTGTTTCCAAGAAAGCAGTAGCAATGGAATCCTCTTGGTCTGATCTTGAGCAAAAA
ATGCAAGCGGGTGAAATCATTGAAGCGGCTGTGAAAGAAGTAGTGAAGGGCGGCCTTGTT
GTTGATGTAGGCGTTCGCGGCTTCATTCCGGCTTCCATGGTAGAGCGTCATTTTGTTGAA
GATTTCTCCGACTACAAAGGCAAAACATTGGCTTTGAAAGTAGTAGAAATGGATAAGGAA
AAGAATAAAGTCATCCTGTCCCACAAAGCGGTTTTGGAAGACGAAGTAAAAGTGCAAAAG
CAATCCATTATGGATAAAATCCAAGTGGGGCAAGTGTTGGAAGGAACGGTTCAGCGCATG
ACCGATTTCGGCGTATTCGTGGATATCGGTGGTGTTGATGGATTGGTTCACGTATCTGAG
CTTGCTTGGAACCGTGTAGATAAGCCGTCCGATGTCGTGAAAGAAGGCGACAAGGTAAAA
GTGAAGGTCCTCAAAATTGACCGTGAAAACGAGCGCATTGGCCTTAGCATCAAGGAAACG
CAAGCAGGTCCATGGGCGAGCGTTGCAGAAGATTTTAAAGCGGGCTCTATTTTGAATGGA
ACGGTAAAACGTCTGGTGTCCTTCGGTGCATTTATTGAGCTGGCACCTGGAATCGAAGGC
CTCGTACACATCTCCCAGATTGCAAATCGTCGGGTGAATACACCTAGTGAGGTGTTGAAA
GAGGGTCAAGAGGTACAGGTGAAGGTTTTGGATGTTGTTCCACAAGAACAACGCATTAGC
CTCAGTATCCGTGCAGTAGAAGAAGACCGTGTGGAGCAGGCAGAACGTGCGAGCAAGCGT
GAACAGCAACAATTCACGCAAGAAAACAACCAACCAATGGGCGTGACATTGGGCGAGTTG
TTCGGTGATCTGAAAGACAAGTTCAAGTAA


>BBR47_24430 30S ribosomal protein S1 homolog
MEETNVSLTDATTISVGDVVKATVTKVEDKQALVDLGYKYDGLIPISELSPLHVEKVSDV
VAVGDTFEVKVIKLNDEKEELVVSKKAVAMESSWSDLEQKMQAGEIIEAAVKEVVKGGLV
VDVGVRGFIPASMVERHFVEDFSDYKGKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQK
QSIMDKIQVGQVLEGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVDKPSDVVKEGDKVK
VKVLKIDRENERIGLSIKETQAGPWASVAEDFKAGSILNGTVKRLVSFGAFIELAPGIEG
LVHISQIANRRVNTPSEVLKEGQEVQVKVLDVVPQEQRISLSIRAVEEDRVEQAERASKR
EQQQFTQENNQPMGVTLGELFGDLKDKFK

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.