small fontnormal fontlarge fontmail to

CDS Information : BBR47_24430

close allopen/close all

close this sectionGenomic map

Display

Brevibacillus brevis NBRC 100599 chromosome

Legend Jump
Overview 
Genome

close this sectionLocation

Organism Brevibacillus brevis NBRC 100599
Replicon chromosome
Start / Stop / Direction 2,523,048 / 2,524,217 / +
Location 2523048..2524217
Type CDS
Length 1,170 bp (389 aa)

close this sectionAnnotation

Product 30S ribosomal protein S1 homolog
Gene name ypfD
Functional category Information pathways
- Protein synthesis
- - Ribosomal proteins
EC number
Note ypfD in Bacillus subtilis.
KEGG pathway
Sequence feature
References Uniprot:P38494 Pubmed:17218307,14586115,7704259
Uniprot:P0AG67 Pubmed:1283001,9716382

close this sectionComputational search results

BLASTP
Database:UniProtKB:13.0
1E=1e-128Q9KCD6_BACHD30S ribosomal protein S1Alignment
2E=1e-124Q5WGU6_BACSK30S ribosomal protein S1Alignment
3E=1e-121Q65I09_BACLDYpfD
Nucleic acid-binding protein
Alignment
4E=1e-121Q8EQA5_OCEIH30S ribosomal protein S1Alignment
5E=1e-121A8FEM4_BACP2Ribosomal protein S1Alignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000110 Ribosomal protein S1 (Family)
 [17-35]  1.1e-58 PR00681 [35-49]  1.1e-58 PR00681 [83-102]  1.1e-58 PR00681 [107-123]  1.1e-58 PR00681 [124-141]  1.1e-58 PR00681 [153-173]  1.1e-58 PR00681 [210-231]  1.1e-58 PR00681 [288-307]  1.1e-58 PR00681 [327-345]  1.1e-58 PR00681
PR00681   RIBOSOMALS1
IPR003029 S1, RNA binding (Domain)
 [13-86]  3.5e-22 PF00575 [100-169]  2.3e-17 PF00575 [186-258]  1.1e-31 PF00575 [271-344]  3.9e-25 PF00575
PF00575   S1
 [15-86]  4.2e-20 SM00316 [102-169]  3e-10 SM00316 [188-258]  2.6e-29 SM00316 [273-344]  5.3e-25 SM00316
SM00316   no description
 [17-86]  20.021 PS50126 [104-169]  18.671 PS50126 [190-258]  24.678 PS50126 [275-344]  23.396 PS50126
PS50126   S1
IPR008994 Nucleic acid-binding, OB-fold (Domain)
 [4-161]  2.7e-35 SSF50249 [188-272]  8.9e-29 SSF50249 [273-362]  3e-25 SSF50249
SSF50249   Nucleic acid-binding proteins
IPR012340 Nucleic acid-binding, OB-fold (Domain)
 [14-88]  6.9e-15 G3DSA:2.40.50.140 [99-171]  6.1e-07 G3DSA:2.40.50.140 [185-260]  1.6e-22 G3DSA:2.40.50.140 [275-370]  1.6e-21 G3DSA:2.40.50.140
G3DSA:2.40.50.140   no description
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 389 amino acids
molecular mass 42,919.15 Da
pI 4.78
aa composition
AlaValLeuIlePheTrpProMetGlySer
5.9
(23aa)
15.4
(60aa)
7.5
(29aa)
5.4
(21aa)
3.1
(12aa)
0.8
(3aa)
2.3
(9aa)
2.1
(8aa)
7.2
(28aa)
6.2
(24aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
3.9
(15aa)
0
(0aa)
2.6
(10aa)
5.1
(20aa)
0.8
(3aa)
9.8
(38aa)
1.3
(5aa)
3.6
(14aa)
6.9
(27aa)
10.3
(40aa)

open this sectionSequence