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CDS Information : BBR47_28450

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close this sectionGenomic map

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Brevibacillus brevis NBRC 100599 chromosome

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Overview 
Genome

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Organism Brevibacillus brevis NBRC 100599
Replicon chromosome
Start / Stop / Direction 2,969,670 / 2,970,620 / +
Location 2969670..2970620
Type CDS
Length 951 bp (316 aa)

close this sectionAnnotation

Product D-alanine--D-alanine ligase
Gene name ddl
Functional category Cell envelope and cellular processes
- Cell wall
EC number 6.3.2.4
Note
KEGG pathway
Sequence feature
References HAMAP:MF_00047
Uniprot:P07862 Pubmed:1993184

close this sectionComputational search results

BLASTP
Database:UniProtKB:13.0
1E=2e-97A9U7Q2_PHYPAPredicted proteinAlignment
2E=2e-89Q3EKQ8_BACTID-alanine--D-alanine ligaseAlignment
3E=7e-88A9VHL5_9BACID-alanine--D-alanine ligaseAlignment
4E=1e-87Q63AX2_BACCZD-alanine--D-alanine ligaseAlignment
5E=4e-87A0REK3_BACAHD-alanine--D-alanine ligaseAlignment
HAMAP
Database:HAMAP:20080521
 [1-303]  35.111 MF_00047
MF_00047   DDL
InterPro
Database:interpro:16.0
IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site (Conserved_site)
 [63-74]  PS00843
PS00843   DALA_DALA_LIGASE_1
IPR000291 D-alanine--D-alanine ligase/VANA/B/C (Family)
 [63-74]  PS00843
PS00843   DALA_DALA_LIGASE_1
IPR005905 D-alanine--D-alanine ligase (Family)
 [45-312]  9.4e-65 PTHR23132
PTHR23132   D-ALANINE--D-ALANINE LIGASE
 [2-303]  2.8e-105 TIGR01205
TIGR01205   D_ala_D_alaTIGR: D-alanine--D-alanine ligas
IPR011095 D-alanine--D-alanine ligase, C-terminal (Domain)
 [96-300]  1.6e-57 PF07478
PF07478   Dala_Dala_lig_C
IPR011127 D-alanine--D-alanine ligase, N-terminal (Domain)
 [1-95]  4.1e-46 PF01820
PF01820   Dala_Dala_lig_N
IPR011761 ATP-grasp fold (Domain)
 [101-300]  45.802 PS50975
PS50975   ATP_GRASP
IPR013816 ATP-grasp fold, subdomain 2 (Domain)
 [150-302]  7.5e-36 G3DSA:3.30.470.20
G3DSA:3.30.470.20   no description
IPR013817 Pre-ATP-grasp fold (Domain)
 [2-85]  1.5e-22 G3DSA:3.40.50.20
G3DSA:3.40.50.20   no description
IPR016185 PreATP-grasp-like fold (Domain)
 [1-95]  3.1e-30 SSF52440
SSF52440   PreATP-grasp domain
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 316 amino acids
molecular mass 34,520.67 Da
pI 4.66
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.5
(27aa)
7
(22aa)
11.4
(36aa)
7.3
(23aa)
1.3
(4aa)
0.9
(3aa)
4.4
(14aa)
3.2
(10aa)
8.9
(28aa)
6.3
(20aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
4.4
(14aa)
1.6
(5aa)
2.5
(8aa)
7
(22aa)
4.1
(13aa)
4.4
(14aa)
1.3
(4aa)
3.8
(12aa)
4.7
(15aa)
7
(22aa)

open this sectionSequence