CDS Information : BBR47_45770

Display	1000bp 10000bp 100000bp Clone

Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	4,846,292 / 4,846,651 / +
Location	4846292..4846651
Type	CDS
Length	360 bp (119 aa)

Product	conserved hypothetical protein
Gene name	ytcD
Functional category	Similar to unknown proteins - Homologous to unknown proteins
EC number
Note	ytcD in Bacillus subtilis.
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=2e-56 Q65GV4_BACLD YtcD Possible transcriptional regulator YtcD Alignment 2 E=2e-56 A4ILF2_GEOTN Transcriptional regulator MarR family Alignment 3 E=3e-53 Q2BCE7_9BACI Putative uncharacterized protein Alignment 4 E=4e-51 YTCD_BACSU Uncharacterized HTH-type transcriptional regulator ytcD Alignment 5 E=8e-49 A8FGF3_BACP2 Possible transcriptional regulator Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR002577 Helix-turn-helix, HxlR type (Domain) PF01638   DUF24 PD004032   Q72Y13_BACC1_Q72Y13; PS51118   HTH_HXLR
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	119 amino acids
molecular mass	13,868.31 Da
pI	8.31
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 1.7 (2aa) 5 (6aa) 12.6 (15aa) 10.1 (12aa) 0 (0aa) 2.5 (3aa) 2.5 (3aa) 2.5 (3aa) 6.7 (8aa) 5 (6aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5 (6aa) 3.4 (4aa) 2.5 (3aa) 4.2 (5aa) 5 (6aa) 11.8 (14aa) 2.5 (3aa) 3.4 (4aa) 2.5 (3aa) 10.9 (13aa)

>BBR47_45770 conserved hypothetical protein
GTGAAAAAGAAGTATAACATTTCAGTGGAAGCTACACTTGAGGTCATCGGCGGTAAATGG
AAATGCGTTATTTTGTGTCACCTGACTCACGGAAAAAAACGTACAAGTGAGTTGAAACGA
CTGATGCCGGGCATTACGCAGAAGATGCTGACACAGCAACTTAGAGAACTGGAAGAGGAT
GGTATCATCTGCCGGATCATTTACAATCAAGTTCCGCCCAAAGTGGAGTATGAGCTCAGC
GAGTACGGCTGGACCTTGAAAAGTATTCTCGATTCGCTCTGCTTATGGGGCGAAAAGCAT
ATCATTAAGGAGTACGGCGACAAGTATGCTGTATTGGAAGAAAGCATCTTAAATCAATAA


>BBR47_45770 conserved hypothetical protein
MKKKYNISVEATLEVIGGKWKCVILCHLTHGKKRTSELKRLMPGITQKMLTQQLRELEED
GIICRIIYNQVPPKVEYELSEYGWTLKSILDSLCLWGEKHIIKEYGDKYAVLEESILNQ

NBRC No.	clone name	start	stop	length(bp)
G10-001-178	BB1FE1L10025B03	4,825,651	4,867,035	41,385
G10-001-179	BB1FE1L10030G10	4,832,311	4,869,598	37,288

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.