CDS Information : BBR47_45950

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Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	4,860,115 / 4,858,361 / -
Location	complement(4858361..4860115)
Type	CDS
Length	1,755 bp (584 aa)

Product	ABC transporter ATP binding/permease protein
Gene name	cydD
Functional category	Cell envelope and cellular processes - Transport/binding proteins and lipoproteins
EC number
Note	cydD in Bacillus subtilis.
KEGG pathway
Sequence feature
References	Uniprot:P94367 Pubmed:9852001

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=1e-152 Q65DC0_BACLD CydD ABC membrane transporter ATP-binding protein Alignment 2 E=1e-150 CYDD_BACSU ATP-binding/permease protein cydD Alignment 3 E=1e-147 A8FIU7_BACP2 ABC superfamily ATP binding cassette transporter, ABC/membrane protein Alignment 4 E=1e-145 A7ZAA1_BACA2 CydD Alignment 5 E=1e-137 A2U8H8_BACCO ABC transporter related precursor Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003439 ABC transporter related (Domain) PF00005   ABC_tran PS00211   ABC_TRANSPORTER_1 PS50893   ABC_TRANSPORTER_2 PD000006   Q927C6_LISIN_Q927C6; IPR003593 AAA+ ATPase, core (Domain) SM00382   no description IPR011527 ABC transporter, transmembrane region, type 1 (Domain) SSF90123   Multidrug resistance ABC transporter MsbA, N-terminal domain PS50929   ABC_TM1F IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC (Family) TIGR02868   CydC: ABC transporter, CydDC cysteine expor IPR017871 ABC transporter, conserved site (Conserved_site) PS00211   ABC_TRANSPORTER_1
SignalP	No significant hit
TMHMM	Transmembrane 5
SOSUI	Transmembrane 6

size of protein	584 amino acids
molecular mass	65,291.72 Da
pI	7.87
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 9.6 (56aa) 8 (47aa) 13 (76aa) 5.5 (32aa) 4.6 (27aa) 1.5 (9aa) 3.6 (21aa) 2.9 (17aa) 7.9 (46aa) 5.3 (31aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 3.9 (23aa) 0.9 (5aa) 2.2 (13aa) 6.8 (40aa) 2.9 (17aa) 2.4 (14aa) 0.9 (5aa) 7.9 (46aa) 4.1 (24aa) 6 (35aa)

>BBR47_45950 ABC transporter ATP binding/permease protein
ATGAAGGAAGCGCGAGAAGGCAATCAGGGGTGGTTTCTTCCATACTTTCGCCAGTTTTTC
TGGCAGTTTGCCGCAGCGGCTTTGCTGGGAACCTTGGCAGTGGCATGTGCGAGTGCTTTG
CTGTATACGTCCGGGTATTTGATTTCCCGCTCCGCACTCAAGCCCGAAAACGTCTTAATG
GTCTATGTTCCGATCGTACTTGTCCGGGCATTTGGCTTTAGCAAAGCAGTCATTCAGTAC
CTGGAACGTTTGGTTGGACATGATGCAGCTCTGCGTGTGTTGTCGCGTATGCGTGTGCGA
TTGTACCAGACAATCGAACTGCAAGATCAGCTCCTCCGCACTCGTTTTCGTACGGGAGAT
CTGCTTGGTGTACTAGCGGATGACATCGAGCAACTACAAAATGTTTATCTGCGCTTTGTG
CTGCCAGCCGTCTCGGCGGTGCTCCTCTACGGGGCAGGGATTGTGGCACTTGGACGAATG
GACGGGATGTTCGCGCTGCTGATGGCGTTGTACTGTGGTTTTCTGCTGCTTGTTGCACCC
GCAGTAGTCTTGTGGTCATCCATTGCCAAGAGTCGTCGGTTCAAGCAGGAGAGACAGGCC
GCATATCGGGAGTTGACTGATGCTGTTTTTGGCATGAGTGATTGGATTCTTAGTGGTCGT
ACCCAGCAGTTTCTCCAGTTATTTTCGAGACGGCAAAAGACAGCTGCCCAGATCGAAAAC
GGCATCCGACGCGGAGAATGGCGAGTACAGTGGATGTCGCAGTGTGCAATCGGTGGAGCC
ATTGTCTTACTGGTCATCTGGGCGGGTGGACTTGCCGGTGCGAATCAGATTCCTGTTACG
TTGATTGCTGCGATTGGGCTGGTCGCATTTCCGTTGATGGATGCGTTTGCCCGTATTTCT
GATGCAGTTGTGCGAATGCCAGAATACAAGGAGTCTCTGGAGCGGCTTCGGGAGATCGAG
GGCGGTCGTCCCTTTGTGGAAGCGCAGAAGGAAAAGGTGGCAGATCAAGCTGGGGGCATT
TTGAAGTTCGAGCATGTTCGTTTTCGCTACCCACAAGCCAGCAGTTGGAGTGTGCAGGAC
GTGTCTTTTGATGTGCCTCAAGGGGGGGAAATTGCGTTGCTCGGCCGCAGCGGAGCTGGT
AAATCGACAATACTGAACTTGATTCGAGGGGCCTTACAGCCGGAAGTAGGTCAGGTGACT
GTAAATGGACAGCCTGTCCAGTCAGAAGAGGCTTCTGCTTGTTTGTTTTCCGTGTTGAAT
CAGCAGCCGTATTTGTTTGACACAACCGTAGCAAATAACATTAGGCTTGGTCGACCCGAT
GCGTCCGATGAAGAGGTTCGTGCCGTGACAGCTCAAGTCGGTCTGGATCAGCTGATTGAA
TCCCTACCAGACGGTTATCAAACACGGATGCAGGAAACCGGTCTGCGCTTCTCTGGCGGA
GAGAGGCAACGTATTGCCCTTGCCCGGATTTTGCTGCAAAACAAGCCGATTGTTCTCCTG
GATGAACCGACGGTGGGATTAGATCCGTTGACTGAACGCGATTTGATGGCAACGATCTTC
CGTGTCTTGCAAGGGAAAACATTGATTTGGGTGACGCACCACTTGAGCGGGTTAGAGCAA
ATGGACGAGATCATTTTTATGGAGCAGGGATTCATCTCGATGCGAGGGACACATGAGGAG
TTGTATCAGGACAATCCAAGGTATCGCAACCTGTATACAATGGACTGTCCGTTGGTGTCC
ATGTTGGAAAAATGA


>BBR47_45950 ABC transporter ATP binding/permease protein
MKEAREGNQGWFLPYFRQFFWQFAAAALLGTLAVACASALLYTSGYLISRSALKPENVLM
VYVPIVLVRAFGFSKAVIQYLERLVGHDAALRVLSRMRVRLYQTIELQDQLLRTRFRTGD
LLGVLADDIEQLQNVYLRFVLPAVSAVLLYGAGIVALGRMDGMFALLMALYCGFLLLVAP
AVVLWSSIAKSRRFKQERQAAYRELTDAVFGMSDWILSGRTQQFLQLFSRRQKTAAQIEN
GIRRGEWRVQWMSQCAIGGAIVLLVIWAGGLAGANQIPVTLIAAIGLVAFPLMDAFARIS
DAVVRMPEYKESLERLREIEGGRPFVEAQKEKVADQAGGILKFEHVRFRYPQASSWSVQD
VSFDVPQGGEIALLGRSGAGKSTILNLIRGALQPEVGQVTVNGQPVQSEEASACLFSVLN
QQPYLFDTTVANNIRLGRPDASDEEVRAVTAQVGLDQLIESLPDGYQTRMQETGLRFSGG
ERQRIALARILLQNKPIVLLDEPTVGLDPLTERDLMATIFRVLQGKTLIWVTHHLSGLEQ
MDEIIFMEQGFISMRGTHEELYQDNPRYRNLYTMDCPLVSMLEK

NBRC No.	clone name	start	stop	length(bp)
G10-001-178	BB1FE1L10025B03	4,825,651	4,867,035	41,385
G10-001-179	BB1FE1L10030G10	4,832,311	4,869,598	37,288

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.