CDS Information : BBR47_45960

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Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	4,861,857 / 4,860,112 / -
Location	complement(4860112..4861857)
Type	CDS
Length	1,746 bp (581 aa)

Product	ABC transporter ATP binding/permease protein
Gene name	cydC
Functional category	Cell envelope and cellular processes - Transport/binding proteins and lipoproteins
EC number
Note	cydC in Bacillus subtilis.
KEGG pathway
Sequence feature
References	Uniprot:P94366 Pubmed:9852001

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=1e-157 A8FIU8_BACP2 ABC superfamily ATP binding cassette transporter, ABC/membrane protein Alignment 2 E=1e-155 A7ZAA2_BACA2 CydC Alignment 3 E=1e-153 Q65DB9_BACLD CydC ABC membrane transporter ATP-binding protein Alignment 4 E=1e-153 CYDC_BACSU ATP-binding/permease protein cydC Alignment 5 E=1e-153 A2U8H7_BACCO ABC transporter related precursor Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR003439 ABC transporter related (Domain) PF00005   ABC_tran PS00211   ABC_TRANSPORTER_1 PD000006   CYDC_BACSU_P94366; PS50893   ABC_TRANSPORTER_2 IPR003593 AAA+ ATPase, core (Domain) SM00382   no description IPR011527 ABC transporter, transmembrane domain, type 1 (Domain) PS50929   ABC_TM1F SSF90123   Multidrug resistance ABC transporter MsbA, N-terminal domain IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD (Family) TIGR02857   CydD: ABC transporter, CydDC cysteine expor IPR017871 ABC transporter, conserved site (Conserved_site) PS00211   ABC_TRANSPORTER_1
SignalP	No significant hit
TMHMM	Transmembrane 5
SOSUI	Transmembrane 6

size of protein	581 amino acids
molecular mass	64,234.27 Da
pI	6.88
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 7.9 (46aa) 9.1 (53aa) 13.6 (79aa) 5.5 (32aa) 4.3 (25aa) 1.5 (9aa) 2.9 (17aa) 2.2 (13aa) 9.3 (54aa) 6.4 (37aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 5.5 (32aa) 0.2 (1aa) 1.4 (8aa) 5.2 (30aa) 2.1 (12aa) 2.8 (16aa) 1.7 (10aa) 7.6 (44aa) 4.5 (26aa) 6.4 (37aa)

>BBR47_45960 ABC transporter ATP binding/permease protein
ATGGACAAGGAATTGTTCCGCTTACAAGGAATCCGACCGGTTATGCTGCTGCTAGCCGGT
CTTTCCCTCCTGCAAAGTGCGGCGATTATCGGTCAGGCCTTGTTTTTGGCGAAGTCGATT
GCGATCTTGTTTGAAGGTCAAACGGTTCAGATGGCGTATCAGCCGCTTGCCCTGTTTTTG
GTCCTGATAGTCGCTCGCCATACCATCGTTTGGCTACAAAAGAAAGTCGCTGGCCGTTTT
GCAGAAGCTGCCAGTGAGTCTTTGCAAGGGCGCGTTCTATCCCGATTGTTCGAGCGTGGT
CCACGTTTTGCAGCCAGTGAAGGAAGCGGAAAGCTTGTTACGCTTGTTCTGGAAGGGGTA
GATCGTGTACGTACCTACCTGGAGTTGTCTGTTCCGCGTACGCTGGATATGGTTTTTGTT
ACGTTTCCGCTTCTGGCATTTGTCTACAGGCAAGATGTGATTTCTGGACTAATCCTGATA
GTAACGATGCCGGTTCTCATCGGATTTTTTATCGTTCTCGGTCTGGCGGCGCGTAAACAG
GCAGACAAACAATGGCGATCGTATCGAATGCTTTCCCATCATTTCACCGATTCGCTCCGC
GGGCTTGCGACGCTCCGGTTTTTGGGACGCAGCAAAGACCACGGGGAGACTGTCGGAAGA
GTGAGCGATCAATATCGATCCGCTACGATGCGAACGTTGCGCGTGGCCTTCTTGTCTTCT
TTGGCACTCGACTTTTTCAGCATGCTGTCAGTTGCGTTTGTGGCGGTTGGTCTTGGGTTG
CGGCTGATTGAAGGGAACGTTGGCTTTGAAACGGCATTGGTCATCCTGATTCTTGCACCA
GAATACTTTTTGCCAGTACGGATGCTTGGATCGGATTATCATGCCTCATTGGATGGCAAG
GAAGCGCTGGAGACGATTCGTACCATTATCGATAGGGCCGCTACAGATGAACATAAGGCG
GAACCGGAAGTAACGGTTAGTCAGACATCTGTGACAGGTGTATGGAATGGAACGATTACC
TTGTCCGATATTCGGGTCGTCGGTGAGGATGGCAGACAGGTACTGGGTGAGGTATCCGCG
GAATTGGGCAGCAATAGGAGAAGAGTGGGCATTGTAGGGGCGAGCGGGGCAGGAAAATCA
ACCCTTCTCGGAGTGCTAGGCGGCTTTTCTGAACCCGAAGCTGGCGTGATACAAGTAAAT
GGTCAACCCATTTCGTGGGATGCGAAGCAGGAGTGGCAGCGGCAAATCGCTTACATTCCA
CAGCATCCGTATTTATTCAATCAATCGTTGACGGATAACATTCGCTTCTATGAACCGGAA
GCGACGCAGGAACAGGTGGAGCAGGTGATTCGTGATGTCGGTCTGGGAGAGCTGGTGGAC
AGCTTGCCAAATGGCTGTGACGAAATCATTGGCGAAGGGGGACGCACGTTAAGTGGCGGA
CAGTCACAGCGGGTTGCATTAGGACGTGCGCTGCTTGGTAACCGACCAGTGATTTTGCTC
GACGAGCCGACTGCTCACTTAGATATTGAAACGGAATGGGAGCTCAAACAGACCATGTTG
TCGGTGTTGGGGGACAGGCGCGTATTTTTGGCCACACATCGCTTGCATTGGATGCGAGAC
ATGGATTGGATTTGGGTAATGGACCAGGGACGACTGGTAGAAACGGGTACCTATGAACAG
CTCGTTGCACAAAAAGGCGTATTTTATCGGTTGTTGACAGCTAGTGCCAAGGGGGAGAAA
GGATGA


>BBR47_45960 ABC transporter ATP binding/permease protein
MDKELFRLQGIRPVMLLLAGLSLLQSAAIIGQALFLAKSIAILFEGQTVQMAYQPLALFL
VLIVARHTIVWLQKKVAGRFAEAASESLQGRVLSRLFERGPRFAASEGSGKLVTLVLEGV
DRVRTYLELSVPRTLDMVFVTFPLLAFVYRQDVISGLILIVTMPVLIGFFIVLGLAARKQ
ADKQWRSYRMLSHHFTDSLRGLATLRFLGRSKDHGETVGRVSDQYRSATMRTLRVAFLSS
LALDFFSMLSVAFVAVGLGLRLIEGNVGFETALVILILAPEYFLPVRMLGSDYHASLDGK
EALETIRTIIDRAATDEHKAEPEVTVSQTSVTGVWNGTITLSDIRVVGEDGRQVLGEVSA
ELGSNRRRVGIVGASGAGKSTLLGVLGGFSEPEAGVIQVNGQPISWDAKQEWQRQIAYIP
QHPYLFNQSLTDNIRFYEPEATQEQVEQVIRDVGLGELVDSLPNGCDEIIGEGGRTLSGG
QSQRVALGRALLGNRPVILLDEPTAHLDIETEWELKQTMLSVLGDRRVFLATHRLHWMRD
MDWIWVMDQGRLVETGTYEQLVAQKGVFYRLLTASAKGEKG

NBRC No.	clone name	start	stop	length(bp)
G10-001-178	BB1FE1L10025B03	4,825,651	4,867,035	41,385
G10-001-179	BB1FE1L10030G10	4,832,311	4,869,598	37,288

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.