CDS Information : BBR47_46000

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Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	4,865,962 / 4,865,393 / -
Location	complement(4865393..4865962)
Type	CDS
Length	570 bp (189 aa)

Product	RNA polymerase ECF-type sigma factor
Gene name
Functional category	Information pathways - RNA synthesis - - Initiation
EC number
Note
KEGG pathway
Sequence feature
References	Uniprot:Q45585 Pubmed:12073657,1154422

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=4e-40 O65997_CLOAB SigX Alignment 2 E=4e-40 Q7D464_CLOAB Specialized sigma subunit of RNA polymerase Alignment 3 E=1e-34 Q0AW15_SYNWW RNA polymerase, sigma-24 subunit, ECF subfamily Alignment 4 E=3e-32 A5CZY7_PELTS DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Alignment 5 E=3e-30 A5CZK2_PELTS DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR007627 RNA polymerase sigma-70 region 2 (Domain) PF04542   Sigma70_r2 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 (Domain) PF08281   Sigma70_r4_2 IPR013324 RNA polymerase sigma factor, regions 3 and 4 (Domain) SSF88659   Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 (Domain) SSF88946   Sigma2 domain of RNA polymerase sigma factors IPR014284 RNA polymerase sigma-70 (Domain) TIGR02937   sigma70-ECF: RNA polymerase sigma factor, s
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	189 amino acids
molecular mass	21,823.97 Da
pI	7.95
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 6.3 (12aa) 5.8 (11aa) 7.9 (15aa) 7.9 (15aa) 4.8 (9aa) 0.5 (1aa) 1.6 (3aa) 2.6 (5aa) 4.8 (9aa) 8.5 (16aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.2 (8aa) 2.1 (4aa) 5.3 (10aa) 3.7 (7aa) 6.3 (12aa) 7.9 (15aa) 2.6 (5aa) 4.8 (9aa) 3.7 (7aa) 8.5 (16aa)

>BBR47_46000 RNA polymerase ECF-type sigma factor
GTGAACACAGGCATCTGCCAAACAGAAGAACACGAAAAGCAAGTGGAAGGCATGTCGACC
GAAACTTTTACCCACATTTATGGGGCGTACTATAAGCGCGTCTACAAATATATTTGCTAT
CGTATCAATAATCACTACACAGCGGAAGAAATATGCAGTCATGTGTTTGAAATGGTGATT
TCAAAATACAGCAGCTTCTCGCCGGATAAATCAAACTTTGAGGTCTGGTTGTTTGCGATC
GCTAGAAACGCGGTGACAGATTACTTCCGCTCACAGAAAAAAAGAATCAGCTTTTCATTG
GATTCGATTCTGAATTTGGTCTTGCCGAAGTCGTCACCGGAGGACATCGTGATCCGCGAC
GACAATCATCAAGCCTTATTTCAAGCGCTGACGAAGCTGAGTGACAAGGAACGCAATATT
ATCGCCATGAAATATGCGGCTGGTCTTAAAAACGCAGAAATCGCAGAACTGCTTGGTGTG
AGTGGTTCAAATATTGGCGTCGTGCTCTACAGATGCTTGAAAAAGCTGCAAATGGAATTG
CAAAAAGGGGGCTTCCGTTATGAAGAGTAA


>BBR47_46000 RNA polymerase ECF-type sigma factor
MNTGICQTEEHEKQVEGMSTETFTHIYGAYYKRVYKYICYRINNHYTAEEICSHVFEMVI
SKYSSFSPDKSNFEVWLFAIARNAVTDYFRSQKKRISFSLDSILNLVLPKSSPEDIVIRD
DNHQALFQALTKLSDKERNIIAMKYAAGLKNAEIAELLGVSGSNIGVVLYRCLKKLQMEL
QKGGFRYEE

NBRC No.	clone name	start	stop	length(bp)
G10-001-178	BB1FE1L10025B03	4,825,651	4,867,035	41,385
G10-001-179	BB1FE1L10030G10	4,832,311	4,869,598	37,288

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.