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CDS Information : BBR47_53500

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close this sectionGenomic map

Display Clone

Brevibacillus brevis NBRC 100599 chromosome

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Overview 
Genome
Clone

close this sectionLocation

Organism Brevibacillus brevis NBRC 100599
Replicon chromosome
Start / Stop / Direction 5,662,763 / 5,662,302 / -
Location complement(5662302..5662763)
Type CDS
Length 462 bp (153 aa)

close this sectionAnnotation

Product hypothetical protein
Gene name
Functional category Similar to unknown proteins
- Partially similar to unknown proteins
EC number
Note This ORF is encoded by a putative prophage. Brevibacillus brevis 47 has two copies of the putative prophage; This ORF is identical to BBR47_29440.
Containing an ATP dependent DNA ligase, central domain (IPR012310).
KEGG pathway
Sequence feature
References Family/Domain:IPR012310

close this sectionComputational search results

BLASTP
Database:UniProtKB:13.0
1E=2e-23A6CIW4_9BACIATP-dependent DNA ligaseAlignment
2E=5e-22Q5WE67_BACSKATP-dependent DNA ligaseAlignment
3E=5e-16Q65KH5_BACLDLigB
DNA ligase,phage related
Alignment
4E=1e-13O31917_BACSUDNA ligaseAlignment
5E=1e-13O64130_BPSPCYoqV proteinAlignment
HAMAP No significant hit
InterPro
Database:interpro:16.0
IPR000977 ATP-dependent DNA ligase (Family)
 [34-93]  0.00011 PTHR10459
PTHR10459   ATP-DEPENDENT DNA LIGASE FAMILY
IPR008994 Nucleic acid-binding, OB-fold (Domain)
 [33-150]  0.00036 SSF50249
SSF50249   Nucleic acid-binding proteins
IPR012310 ATP dependent DNA ligase, central (Domain)
 [25-61]  1.2e-05 PF01068
PF01068   DNA_ligase_A_M
SignalP No significant hit
TMHMM No significant hit
SOSUI No significant hit

close this sectionCalculated information (Amino acid sequence)

size of protein 153 amino acids
molecular mass 17,482.08 Da
pI 10.2
aa composition
AlaValLeuIlePheTrpProMetGlySer
8.5
(13aa)
7.8
(12aa)
3.9
(6aa)
7.8
(12aa)
3.3
(5aa)
2
(3aa)
3.3
(5aa)
3.3
(5aa)
9.8
(15aa)
2.6
(4aa)
ThrCysAsnGlnTyrLysHisArgAspGlu
5.9
(9aa)
0
(0aa)
2.6
(4aa)
2.6
(4aa)
6.5
(10aa)
7.8
(12aa)
2
(3aa)
9.2
(14aa)
7.8
(12aa)
3.3
(5aa)

open this sectionSequence

close this sectionCovered clones

NBRC No. clone name start stop length(bp)
G10-001-211 BB1FE1L10013A09 5,662,272 5,698,666 36,395

close this sectionDistribution of Our Microbial Genomic DNA clones

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.