CDS Information : BBR47_55330

Display	1000bp 10000bp 100000bp Clone

Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	5,849,468 / 5,850,274 / +
Location	5849468..5850274
Type	CDS
Length	807 bp (268 aa)

Product	putative formamidopyrimidine-DNA glycosylase
Gene name
Functional category	Information pathways - DNA restriction/modification and repair
EC number	3.2.2.23
Note
KEGG pathway
Sequence feature
References	HAMAP:MF_00103 Uniprot:O50606 Pubmed:9461446 Uniprot:P42371 Pubmed:7704272

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=2e-86 Q2B3G7_9BACI DNA glycosylase Alignment 2 E=4e-79 A6CKK3_9BACI DNA glycosylase Alignment 3 E=6e-64 Q5WJM7_BACSK DNA glycosylase Alignment 4 E=7e-64 A2U5N2_BACCO DNA glycosylase Alignment 5 E=5e-51 Q24Q02_DESHY DNA glycosylase Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR000191 Formamidopyrimidine-DNA glycolase (Family) PD003680   FPG_LISMO_Q8Y6W7; PF01149   Fapy_DNA_glyco PF06831   H2TH IPR000214 Formamidopyrimidine-DNA glycolase, zinc-binding site (Binding_site) PS51066   ZF_FPG_2 IPR000214 Formamidopyrimidine-DNA glycolase, zinc-binding site (Domain) PS51066   ZF_FPG_2 IPR010663 Formamidopyrimidine-DNA glycolase, C-terminal (Domain) PF06827   zf-FPG_IleRS IPR010979 Ribosomal protein S13-like, H2TH (Domain) SSF46946   S13-like H2TH domain IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic (Domain) PF01149   Fapy_DNA_glyco SSF81624   N-terminal domain of MutM-like DNA repair proteins PS51068   FPG_CAT IPR015886 Formamidopyrimidine-DNA glycolase, H2TH DNA binding (Domain) PF06831   H2TH PD003680   FPG_LISMO_Q8Y6W7;
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	268 amino acids
molecular mass	30,386.10 Da
pI	7.58
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 5.6 (15aa) 3.7 (10aa) 16.4 (44aa) 3.7 (10aa) 4.9 (13aa) 0.4 (1aa) 5.2 (14aa) 1.9 (5aa) 8.2 (22aa) 3.7 (10aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 6.7 (18aa) 2.6 (7aa) 2.6 (7aa) 4.9 (13aa) 3 (8aa) 3.7 (10aa) 4.1 (11aa) 7.5 (20aa) 3.7 (10aa) 7.5 (20aa)

>BBR47_55330 putative formamidopyrimidine-DNA glycosylase
ATGCCAGAATTACCTGAGATGGAGAACTATCGCCGACTGCTACAGGAGAAAATCGGTGGC
GGAACGATTACGGCCACACACGTTCAGCGGGAAAAAACGATTAATTTGCCTCCTGCGGAA
TTTGCTCGTCTTTTGCAAGACAATCGCCTGACGCTCGTCGACCGCCGTGGCAAGCATCTT
CTCTTCCATCTGGAAAGTGGTCATGTCCTTCTGCTTCACTTGATGCTCGGCGGCTTTCTA
TACCTGGGCTCTGCGGAAGATAAGCTAAAGAGAACCGCTCAAGTGACTCTTTCCTTTGGA
GAACGCCTTTTATATTTTCACGGCCTCCGTTTAGGCTACCTGCATTTACTCACTAACGTT
CAGATCGACGAAAGACTGGCTCCTCTTGGGCCCGAGCCATTGGACCCACTGTTTACCTTT
ACCCGATTTACGGAGCTGCTCGCTGACAAACGCAGTGTCCTCAAAACAGCGCTAGTCAAT
CAGCATTGGCTCGCGGGCATCGGCAACTGCTATGCGGACGAAATCTGCTTCCATGCCGCC
ATCCTGCCTACCCGAACGATCCCGACACTTTCTCTCGAGGAACAAAAACGACTGTATCAT
TCTATGCAAACCGTGCTTACAGAAGCGATTCGATTCGGCGGTTACATGCAGCCGCTTTTT
CAAGGCGATTCCCTGACAGGTGGCTTCGATGAGCGCTGCCAGGTGTACGATCGCGGTGGT
GAGCCTTGCCCGCGCTGTGGACAGCCTATCGAAAAGAGTGAGCTCTCCTCCCGCAAGGTA
TTTGCCTGCGCGAACTGCCAGCATTGA


>BBR47_55330 putative formamidopyrimidine-DNA glycosylase
MPELPEMENYRRLLQEKIGGGTITATHVQREKTINLPPAEFARLLQDNRLTLVDRRGKHL
LFHLESGHVLLLHLMLGGFLYLGSAEDKLKRTAQVTLSFGERLLYFHGLRLGYLHLLTNV
QIDERLAPLGPEPLDPLFTFTRFTELLADKRSVLKTALVNQHWLAGIGNCYADEICFHAA
ILPTRTIPTLSLEEQKRLYHSMQTVLTEAIRFGGYMQPLFQGDSLTGGFDERCQVYDRGG
EPCPRCGQPIEKSELSSRKVFACANCQH

NBRC No.	clone name	start	stop	length(bp)
G10-001-216	BB1FE1L10032F01	5,814,193	5,853,230	39,038
G10-001-217	BB1FE1L10024F04	5,842,375	5,886,637	44,263

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.