CDS Information : BBR47_55410

Display	1000bp 10000bp 100000bp Clone

Brevibacillus brevis NBRC 100599 chromosome	Legend Jump
Overview  Genome Clone

Center position		change
ID		change
Gene name		change

Organism	Brevibacillus brevis NBRC 100599
Replicon	chromosome
Start / Stop / Direction	5,856,948 / 5,855,668 / -
Location	complement(5855668..5856948)
Type	CDS
Length	1,281 bp (426 aa)

Product	probable transcriptional regulator
Gene name
Functional category	Information pathways - RNA synthesis - - Regulation
EC number
Note
KEGG pathway
Sequence feature
References

BLASTP Database:UniProtKB:13.0 show BLAST table	1 E=1e-83 A7GEX4_CLOBL Putative sigma-54 dependent transcriptional regulator Alignment 2 E=5e-83 A7FV67_CLOB1 Putative sigma-54 dependent transcriptional regulator Alignment 3 E=5e-83 A5I3D4_CLOBH Signal-transduction and transcriptional-control protein Putative sigma-54 dependent transcriptional regulator Alignment 4 E=8e-81 Q17ZX8_CLOD6 Putative sigma-54 interacting protein Alignment 5 E=4e-79 A4J4R9_DESRM Sigma54 specific transcriptional regulator, Fis family Alignment
HAMAP	No significant hit
InterPro Database:interpro:16.0	IPR002078 RNA polymerase sigma factor 54, interaction (Domain) PS00675   SIGMA54_INTERACT_1 PS00676   SIGMA54_INTERACT_2 PS00688   SIGMA54_INTERACT_3 PS50045   SIGMA54_INTERACT_4 PF00158   Sigma54_activat IPR002197 Helix-turn-helix, Fis-type (Domain) PR01590   HTHFIS PF02954   HTH_8 IPR003593 AAA+ ATPase, core (Domain) SM00382   no description IPR009057 Homeodomain-like (Domain) SSF46689   Homeodomain-like IPR020441 Helix-turn-helix, Fis (Region) PR01590   HTHFIS IPR025662 Sigma-54 interaction domain, ATP-binding site 1 (Binding_site) PS00675   SIGMA54_INTERACT_1 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 (Binding_site) PS00676   SIGMA54_INTERACT_2 IPR025944 Sigma-54 interaction domain, conserved site (Conserved_site) PS00688   SIGMA54_INTERACT_3
SignalP	No significant hit
TMHMM	No significant hit
SOSUI	No significant hit

size of protein	426 amino acids
molecular mass	48,160.59 Da
pI	7.33
aa composition	Ala Val Leu Ile Phe Trp Pro Met Gly Ser 6.3 (27aa) 6.1 (26aa) 12.4 (53aa) 5.9 (25aa) 3.3 (14aa) 0.5 (2aa) 3.8 (16aa) 2.3 (10aa) 8.2 (35aa) 4.5 (19aa) Thr Cys Asn Gln Tyr Lys His Arg Asp Glu 4.9 (21aa) 1.4 (6aa) 2.8 (12aa) 4.9 (21aa) 3.5 (15aa) 6.8 (29aa) 2.6 (11aa) 6.3 (27aa) 3.1 (13aa) 10.3 (44aa)

>BBR47_55410 probable transcriptional regulator
ATGATCCTGCAAACCGGACAGCCGGGAATGATTTTTGACATGAAAAAGAACGAGTCGCAG
TGTGGCAATTGCAAGTTTTTGCAGCAATGCCGGGAGCTGGCGACGATTGGATTTCCGGTG
CACAAACGGGAGAAGACGGTAGGAGTCATCGGAATTATCGGCTTTTCCCCTGAACAAAAG
GAAAAAATGCTGCACCACTCGGAAAAATGGATGCCGTTTTTGCAGCATACGAGTTCTTTG
ATAGCGCACAAGCTGCTAGAGCTGGATGCGGAGCGGGAGAAGAGTTGCAATATTCAAGAG
GAAATGCCGCAGGCCACGGTTCATCCGGTGTATTTCGCCCAGCTGATTGGGGCAGAAACA
GGCTTGCGAGATGTGATTGCCAAAGCGAAAAAAGTGACGAACAGCATTTCCACCGTTTTG
ATCCGGGGAGAGAGCGGAACGGGCAAGGAGCTGTTGGCCAAAGCCATTCATTGCGAGAGT
GGGCGCAGCAGACAGCCATTTGTAGCAGTGAATTGCGCGGCGATTCCCGAGACCTTGCTG
GAAAGCGAATTGTTCGGGTACGAAGGCGGCGCATTCACAGGCTCCAGACGCGAAGGGAAG
CCGGGAAAATTTGAACTGGCCCACAAAGGTACGATTTTTCTGGATGAAGTAGGCGATATT
CCGTTGTCCCTCCAGCCCAAGCTGTTGCGCGTCCTTCAGGAGAAAACAGTAGATCGGGTA
GGCGGCGTAAAAACGTTGGGTGTCGATGTGCGTGTTATTGCTGCTACACACCGGGATTTG
GAGAGCATGGTCAGGGAAGGAACGTTTCGCGAGGATTTGTATTATCGACTCAACGTCATC
CCTCTGCGGTTAAAGCCGTTGCGTGAACGTACGGAGGATATCGCGCTTTACTTGCAGCAC
TTCCTGTATCGGTACGGGACGTTGCTGCAAAAAGGCAGACTGGAGCTCGAAGCCCAACTC
GTCCAACGACTACAAGCATACGAATGGCCGGGGAATATTCGTCAGCTGGAAAACGCCGTC
GAGTATATGGTCAACATGGCGGAGGGGCACGTCATCGGCAACGAGGAGCTTCCTGAGTAT
CTGCTGTTTGAGGATGAGCCGACGACAGTAGGCAGCGATTTGGGGCTGGAAAAGCTGGTG
GCAGAATATGAACGCTCCATTCTTCAGCGCTATTTGAATGCAGGCAAGTATGGGCAGGAT
AAAGCCGCGATTGCCAATGAGCTACGGATCAGCTTGTCGACCCTGTACCGGAAGATGGAG
AAGTACGGATTGATTAAATAA


>BBR47_55410 probable transcriptional regulator
MILQTGQPGMIFDMKKNESQCGNCKFLQQCRELATIGFPVHKREKTVGVIGIIGFSPEQK
EKMLHHSEKWMPFLQHTSSLIAHKLLELDAEREKSCNIQEEMPQATVHPVYFAQLIGAET
GLRDVIAKAKKVTNSISTVLIRGESGTGKELLAKAIHCESGRSRQPFVAVNCAAIPETLL
ESELFGYEGGAFTGSRREGKPGKFELAHKGTIFLDEVGDIPLSLQPKLLRVLQEKTVDRV
GGVKTLGVDVRVIAATHRDLESMVREGTFREDLYYRLNVIPLRLKPLRERTEDIALYLQH
FLYRYGTLLQKGRLELEAQLVQRLQAYEWPGNIRQLENAVEYMVNMAEGHVIGNEELPEY
LLFEDEPTTVGSDLGLEKLVAEYERSILQRYLNAGKYGQDKAAIANELRISLSTLYRKME
KYGLIK

NBRC No.	clone name	start	stop	length(bp)
G10-001-217	BB1FE1L10024F04	5,842,375	5,886,637	44,263

We have been distributing copies of the microbial genomic DNA clones constructed during the course of each of the genomic DNA sequencing projects.
You can find more detailed information at http://www.nbrc.nite.go.jp/e/mdna-e.html.